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LETTER

Evolution of the mammalian transcription factor binding repertoire via transposable elements

  • Guillaume Bourque
  • Bernard Leong
  • Vinsensius B. Vega
  • Xi Chen
  • Yen Ling Lee
  • Kandhadayar G. Srinivasan Joon-Lin Chew
  • ... [+2 authors] ...,
  • Yijun Ruan
  • Chia-Lin Wei
  • Huck Hui Ng
  • Edison T. Liu
  • First Published August 5, 2008
LETTER

Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets

  • David S. Johnson
  • Wei Li
  • D. Benjamin Gordon
  • Arindam Bhattacharjee
  • Bo Curry
  • Jayati Ghosh Leonardo Brizuela Jason S. Carroll Myles Brown Paul Flicek Christoph M. Koch Ian Dunham Mark Bieda Xiaoqin Xu Peggy J. Farnham Philipp Kapranov David A. Nix Thomas R. Gingeras Xinmin Zhang Heather Holster Nan Jiang Roland D. Green Jun S. Song Scott A. McCuine Elizabeth Anton Loan Nguyen Nathan D. Trinklein Zhen Ye Keith Ching David Hawkins Bing Ren Peter C. Scacheri Joel Rozowsky Alexander Karpikov Ghia Euskirchen Sherman Weissman Mark Gerstein Michael Snyder Annie Yang Zarmik Moqtaderi Heather Hirsch Hennady P. Shulha Yutao Fu Zhiping Weng
  • ... [+39 authors] ...,
  • Kevin Struhl
  • Richard M. Myers
  • Jason D. Lieb
  • X. Shirley Liu
  • First Published February 7, 2008
LETTER

Whole-genome maps of USF1 and USF2 binding and histone H3 acetylation reveal new aspects of promoter structure and candidate genes for common human disorders

  • Alvaro Rada-Iglesias
  • Adam Ameur
  • Philipp Kapranov
  • Stefan Enroth
  • Jan Komorowski
  • Thomas R. Gingeras
  • Claes Wadelius
  • First Published January 29, 2008
LETTER

Pseudogenes in the ENCODE regions: Consensus annotation, analysis of transcription, and evolution

  • Deyou Zheng
  • Adam Frankish
  • Robert Baertsch
  • Philipp Kapranov
  • Alexandre Reymond
  • Siew Woh Choo Yontao Lu France Denoeud Stylianos E. Antonarakis Michael Snyder Yijun Ruan Chia-Lin Wei
  • ... [+7 authors] ...,
  • Thomas R. Gingeras
  • Roderic Guigó
  • Jennifer Harrow
  • Mark B. Gerstein
  • First Published June 13, 2007
LETTER

Structured RNAs in the ENCODE selected regions of the human genome

  • Stefan Washietl
  • Jakob S. Pedersen
  • Jan O. Korbel
  • Claudia Stocsits
  • Andreas R. Gruber
  • Jörg Hackermüller Jana Hertel Manja Lindemeyer Kristin Reiche Andrea Tanzer Catherine Ucla Carine Wyss Stylianos E. Antonarakis France Denoeud Julien Lagarde Jorg Drenkow Philipp Kapranov Thomas R. Gingeras Roderic Guigó Michael Snyder
  • ... [+15 authors] ...,
  • Mark B. Gerstein
  • Alexandre Reymond
  • Ivo L. Hofacker
  • Peter F. Stadler
  • First Published June 13, 2007
LETTER

Fusion transcripts and transcribed retrotransposed loci discovered through comprehensive transcriptome analysis using Paired-End diTags (PETs)

  • Yijun Ruan
  • Hong Sain Ooi
  • Siew Woh Choo
  • Kuo Ping Chiu
  • Xiao Dong Zhao
  • K.G. Srinivasan Fei Yao Chiou Yu Choo Jun Liu Pramila Ariyaratne Wilson G.W. Bin Vladimir A. Kuznetsov Atif Shahab
  • ... [+8 authors] ...,
  • Wing-Kin Sung
  • Guillaume Bourque
  • Nallasivam Palanisamy
  • Chia-Lin Wei
  • First Published June 13, 2007
LETTER

Mycobacterium tuberculosis " > Comparing Genomes within the Species Mycobacterium tuberculosis

  • Midori Kato-Maeda
  • Jeanne T. Rhee
  • Thomas R. Gingeras
  • Hugh Salamon
  • Jorg Drenkow
  • Nat Smittipat
  • Peter M. Small
  • First Published April 1, 2001
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