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LETTER

Transcriptional enhancement by GATA1-occupied DNA segments is strongly associated with evolutionary constraint on the binding site motif

  • Yong Cheng
  • David C. King
  • Louis C. Dore
  • Xinmin Zhang
  • Yuepin Zhou
  • Ying Zhang Christine Dorman Demesew Abebe Swathi A. Kumar Francesca Chiaromonte
  • ... [+5 authors] ...,
  • Webb Miller
  • Roland D. Green
  • Mitchell J. Weiss
  • Ross C. Hardison
  • First Published September 25, 2008
LETTER

cis-regulatory elements using comparative genomics: Some lessons from ENCODE data" > Finding cis-regulatory elements using comparative genomics: Some lessons from ENCODE data

  • David C. King
  • James Taylor
  • Ying Zhang
  • Yong Cheng
  • Heather A. Lawson
  • Joel Martin
  • Francesca Chiaromonte
  • Webb Miller
  • Ross C. Hardison
  • First Published June 13, 2007
LETTER

cis-regulatory modules" > Experimental validation of predicted mammalian erythroid cis-regulatory modules

  • Hao Wang
  • Ying Zhang
  • Yong Cheng
  • Yuepin Zhou
  • David C. King
  • James Taylor Francesca Chiaromonte Jyotsna Kasturi Hanna Petrykowska Brian Gibb Christine Dorman Webb Miller
  • ... [+7 authors] ...,
  • Louis C. Dore
  • John Welch
  • Mitchell J. Weiss
  • Ross C. Hardison
  • First Published October 12, 2006
LETTER

Diversification of transcriptional modulation: Large-scale identification and characterization of putative alternative promoters of human genes

  • Kouichi Kimura
  • Ai Wakamatsu
  • Yutaka Suzuki
  • Toshio Ota
  • Tetsuo Nishikawa
  • Riu Yamashita Jun-ichi Yamamoto Mitsuo Sekine Katsuki Tsuritani Hiroyuki Wakaguri Shizuko Ishii Tomoyasu Sugiyama Kaoru Saito Yuko Isono Ryotaro Irie Norihiro Kushida Takahiro Yoneyama Rie Otsuka Katsuhiro Kanda Takahide Yokoi Hiroshi Kondo Masako Wagatsuma Katsuji Murakawa Shinichi Ishida Tadashi Ishibashi Asako Takahashi-Fujii Tomoo Tanase Keiichi Nagai
  • ... [+23 authors] ...,
  • Hisashi Kikuchi
  • Kenta Nakai
  • Takao Isogai
  • Sumio Sugano
  • First Published December 12, 2005
LETTER

cis-regulatory modules in aligned mammalian genome sequences" > Evaluation of regulatory potential and conservation scores for detecting cis-regulatory modules in aligned mammalian genome sequences

  • David C. King
  • James Taylor
  • Laura Elnitski
  • Francesca Chiaromonte
  • Webb Miller
  • Ross C. Hardison
  • First Published July 15, 2005
Chicken Special/Letters

Evolution and functional classification of vertebrate gene deserts

  • Ivan Ovcharenko
  • Gabriela G. Loots
  • Marcelo A. Nobrega
  • Ross C. Hardison
  • Webb Miller
  • Lisa Stubbs
  • First Published December 8, 2004
LETTER

Analysis of Small Human Proteins Reveals the Translation of Upstream Open Reading Frames of mRNAs

  • Masaaki Oyama
  • Chiharu Itagaki
  • Hiroko Hata
  • Yutaka Suzuki
  • Tomonori Izumi
  • Tohru Natsume
  • Toshiaki Isobe
  • Sumio Sugano
  • First Published October 15, 2004
LETTER

Sequence Comparison of Human and Mouse Genes Reveals a Homologous Block Structure in the Promoter Regions

  • Yutaka Suzuki
  • Riu Yamashita
  • Matsuyuki Shirota
  • Yuta Sakakibara
  • Joe Chiba
  • Junko Mizushima-Sugano
  • Kenta Nakai
  • Sumio Sugano
  • First Published September 1, 2004
LETTER

Distinguishing Regulatory DNA From Neutral Sites

  • Laura Elnitski
  • Ross C. Hardison
  • Jia Li
  • Shan Yang
  • Diana Kolbe
  • Pallavi Eswara
  • ... [+1 authors] ...,
  • Michael J. O'Connor
  • Scott Schwartz
  • Webb Miller
  • Francesca Chiaromonte
  • First Published January 1, 2003
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