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LETTER

E2F in vivo binding specificity: Comparison of consensus versus nonconsensus binding sites

  • Alina Rabinovich
  • Victor X. Jin
  • Roman Rabinovich
  • Xiaoqin Xu
  • Peggy J. Farnham
  • First Published October 3, 2008
LETTER

Transcriptional enhancement by GATA1-occupied DNA segments is strongly associated with evolutionary constraint on the binding site motif

  • Yong Cheng
  • David C. King
  • Louis C. Dore
  • Xinmin Zhang
  • Yuepin Zhou
  • Ying Zhang Christine Dorman Demesew Abebe Swathi A. Kumar Francesca Chiaromonte
  • ... [+5 authors] ...,
  • Webb Miller
  • Roland D. Green
  • Mitchell J. Weiss
  • Ross C. Hardison
  • First Published September 25, 2008
LETTER

Using ChIP-chip technology to reveal common principles of transcriptional repression in normal and cancer cells

  • Vitalina M. Komashko
  • Luis G. Acevedo
  • Sharon L. Squazzo
  • Sushma S. Iyengar
  • Alina Rabinovich
  • Henriette O’Geen
  • Roland Green
  • Peggy J. Farnham
  • First Published March 17, 2008
LETTER

Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets

  • David S. Johnson
  • Wei Li
  • D. Benjamin Gordon
  • Arindam Bhattacharjee
  • Bo Curry
  • Jayati Ghosh Leonardo Brizuela Jason S. Carroll Myles Brown Paul Flicek Christoph M. Koch Ian Dunham Mark Bieda Xiaoqin Xu Peggy J. Farnham Philipp Kapranov David A. Nix Thomas R. Gingeras Xinmin Zhang Heather Holster Nan Jiang Roland D. Green Jun S. Song Scott A. McCuine Elizabeth Anton Loan Nguyen Nathan D. Trinklein Zhen Ye Keith Ching David Hawkins Bing Ren Peter C. Scacheri Joel Rozowsky Alexander Karpikov Ghia Euskirchen Sherman Weissman Mark Gerstein Michael Snyder Annie Yang Zarmik Moqtaderi Heather Hirsch Hennady P. Shulha Yutao Fu Zhiping Weng
  • ... [+39 authors] ...,
  • Kevin Struhl
  • Richard M. Myers
  • Jason D. Lieb
  • X. Shirley Liu
  • First Published February 7, 2008
LETTER

cis-regulatory elements using comparative genomics: Some lessons from ENCODE data" > Finding cis-regulatory elements using comparative genomics: Some lessons from ENCODE data

  • David C. King
  • James Taylor
  • Ying Zhang
  • Yong Cheng
  • Heather A. Lawson
  • Joel Martin
  • Francesca Chiaromonte
  • Webb Miller
  • Ross C. Hardison
  • First Published June 13, 2007
LETTER

Identification of an OCT4 and SRY regulatory module using integrated computational and experimental genomics approaches

  • Victor X. Jin
  • Henriette O’Geen
  • Sushma Iyengar
  • Roland Green
  • Peggy J. Farnham
  • First Published June 13, 2007
Methods

cis-regulatory modules from chromatin immunoprecipitation microarray data—A case study using E2F1" > A computational genomics approach to identify cis-regulatory modules from chromatin immunoprecipitation microarray data—A case study using E2F1

  • Victor X. Jin
  • Alina Rabinovich
  • Sharon L. Squazzo
  • Roland Green
  • Peggy J. Farnham
  • First Published October 19, 2006
LETTER

cis-regulatory modules" > Experimental validation of predicted mammalian erythroid cis-regulatory modules

  • Hao Wang
  • Ying Zhang
  • Yong Cheng
  • Yuepin Zhou
  • David C. King
  • James Taylor Francesca Chiaromonte Jyotsna Kasturi Hanna Petrykowska Brian Gibb Christine Dorman Webb Miller
  • ... [+7 authors] ...,
  • Louis C. Dore
  • John Welch
  • Mitchell J. Weiss
  • Ross C. Hardison
  • First Published October 12, 2006
LETTER

Suz12 binds to silenced regions of the genome in a cell-type-specific manner

  • Sharon L. Squazzo
  • Henriette O’Geen
  • Vitalina M. Komashko
  • Sheryl R. Krig
  • Victor X. Jin
  • Sung-wook Jang
  • ... [+1 authors] ...,
  • Raphael Margueron
  • Danny Reinberg
  • Roland Green
  • Peggy J. Farnham
  • First Published June 2, 2006
LETTER

Unbiased location analysis of E2F1-binding sites suggests a widespread role for E2F1 in the human genome

  • Mark Bieda
  • Xiaoqin Xu
  • Michael A. Singer
  • Roland Green
  • Peggy J. Farnham
  • First Published April 10, 2006
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