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Elucidation of the ELK1 target gene network reveals a role in the coordinate regulation of core components of the gene regulation machinery

Joanna Boros
Ian J. Donaldson
Amanda O'Donnell
Zaneta A. Odrowaz
Leo Zeef
Mathieu Lupien
... [+1 authors] ...,
Clifford A. Meyer
X. Shirley Liu
Myles Brown
Andrew D. Sharrocks

First Published August 17, 2009

Functional diversity for REST (NRSF) is defined by in vivo binding affinity hierarchies at the DNA sequence level

Alexander W. Bruce
Andrés J. López-Contreras
Paul Flicek
Thomas A. Down
Pawandeep Dhami
Shane C. Dillon Christoph M. Koch
... [+2 authors] ...,
Cordelia F. Langford
Ian Dunham
Robert M. Andrews
David Vetrie

First Published April 28, 2009

Cell-type selective chromatin remodeling defines the active subset of FOXA1-bound enhancers

Jérôme Eeckhoute
Mathieu Lupien
Clifford A. Meyer
Michael P. Verzi
Ramesh A. Shivdasani
X. Shirley Liu
Myles Brown

First Published January 7, 2009

A high-resolution map of nucleosome positioning on a fission yeast centromere

Jun S. Song
Xingkun Liu
X. Shirley Liu
Xiangwei He

First Published April 14, 2008

Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets

David S. Johnson
Wei Li
D. Benjamin Gordon
Arindam Bhattacharjee
Bo Curry
Jayati Ghosh Leonardo Brizuela Jason S. Carroll Myles Brown Paul Flicek Christoph M. Koch Ian Dunham Mark Bieda Xiaoqin Xu Peggy J. Farnham Philipp Kapranov David A. Nix Thomas R. Gingeras Xinmin Zhang Heather Holster Nan Jiang Roland D. Green Jun S. Song Scott A. McCuine Elizabeth Anton Loan Nguyen Nathan D. Trinklein Zhen Ye Keith Ching David Hawkins Bing Ren Peter C. Scacheri Joel Rozowsky Alexander Karpikov Ghia Euskirchen Sherman Weissman Mark Gerstein Michael Snyder Annie Yang Zarmik Moqtaderi Heather Hirsch Hennady P. Shulha Yutao Fu Zhiping Weng
... [+39 authors] ...,
Kevin Struhl
Richard M. Myers
Jason D. Lieb
X. Shirley Liu

First Published February 7, 2008

C. elegans noncoding transcriptome with a whole-genome tiling microarray" > Mapping the C. elegans noncoding transcriptome with a whole-genome tiling microarray

Housheng He
Jie Wang
Tao Liu
X. Shirley Liu
Tiantian Li
Yunfei Wang Zuwei Qian Haixia Zheng Xiaopeng Zhu Tao Wu Baochen Shi
... [+6 authors] ...,
Wei Deng
Wei Zhou
Geir Skogerbø
Runsheng Chen

First Published September 4, 2007

Genomic localization of RNA binding proteins reveals links between pre-mRNA processing and transcription

Ian A. Swinburne
Clifford A. Meyer
X. Shirley Liu
Pamela A. Silver
Alexander S. Brodsky

First Published June 12, 2006

Leveraging the Mouse Genome for Gene Prediction in Human: From Whole-Genome Shotgun Reads to a Global Synteny Map

Paul Flicek
Evan Keibler
Ping Hu
Ian Korf
Michael R. Brent

First Published January 1, 2003