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Transcriptional enhancement by GATA1-occupied DNA segments is strongly associated with evolutionary constraint on the binding site motif

  • Yong Cheng
  • David C. King
  • Louis C. Dore
  • Xinmin Zhang
  • Yuepin Zhou
  • Ying Zhang Christine Dorman Demesew Abebe Swathi A. Kumar Francesca Chiaromonte
  • ... [+5 authors] ...,
  • Webb Miller
  • Roland D. Green
  • Mitchell J. Weiss
  • Ross C. Hardison
  • First Published September 25, 2008

Genome-wide mapping and analysis of active promoters in mouse embryonic stem cells and adult organs

  • Leah O. Barrera
  • Zirong Li
  • Andrew D. Smith
  • Karen C. Arden
  • Webster K. Cavenee
  • Michael Q. Zhang
  • Roland D. Green
  • Bing Ren
  • First Published November 27, 2007

cis-regulatory elements using comparative genomics: Some lessons from ENCODE data" > Finding cis-regulatory elements using comparative genomics: Some lessons from ENCODE data

  • David C. King
  • James Taylor
  • Ying Zhang
  • Yong Cheng
  • Heather A. Lawson
  • Joel Martin
  • Francesca Chiaromonte
  • Webb Miller
  • Ross C. Hardison
  • First Published June 13, 2007

cis-regulatory modules" > Experimental validation of predicted mammalian erythroid cis-regulatory modules

  • Hao Wang
  • Ying Zhang
  • Yong Cheng
  • Yuepin Zhou
  • David C. King
  • James Taylor Francesca Chiaromonte Jyotsna Kasturi Hanna Petrykowska Brian Gibb Christine Dorman Webb Miller
  • ... [+7 authors] ...,
  • Louis C. Dore
  • John Welch
  • Mitchell J. Weiss
  • Ross C. Hardison
  • First Published October 12, 2006

Large-scale structure of genomic methylation patterns

  • Robert A. Rollins
  • Fatemeh Haghighi
  • John R. Edwards
  • Rajdeep Das
  • Michael Q. Zhang
  • Jingyue Ju
  • Timothy H. Bestor
  • First Published December 19, 2005

cis-regulatory modules in aligned mammalian genome sequences" > Evaluation of regulatory potential and conservation scores for detecting cis-regulatory modules in aligned mammalian genome sequences

  • David C. King
  • James Taylor
  • Laura Elnitski
  • Francesca Chiaromonte
  • Webb Miller
  • Ross C. Hardison
  • First Published July 15, 2005

Evolution and functional classification of vertebrate gene deserts

  • Ivan Ovcharenko
  • Gabriela G. Loots
  • Marcelo A. Nobrega
  • Ross C. Hardison
  • Webb Miller
  • Lisa Stubbs
  • First Published December 8, 2004

The mouse genome: Experimental examination of gene predictions and transcriptional start sites

  • Sujit Dike
  • Vivekanand S. Balija
  • Lidia U. Nascimento
  • Zhenyu Xuan
  • Jacqueline Ou
  • Theresa Zutavern
  • ... [+1 authors] ...,
  • Lance E. Palmer
  • Greg Hannon
  • Michael Q. Zhang
  • W. Richard McCombie
  • First Published December 1, 2004

Distinguishing Regulatory DNA From Neutral Sites

  • Laura Elnitski
  • Ross C. Hardison
  • Jia Li
  • Shan Yang
  • Diana Kolbe
  • Pallavi Eswara
  • ... [+1 authors] ...,
  • Michael J. O'Connor
  • Scott Schwartz
  • Webb Miller
  • Francesca Chiaromonte
  • First Published January 1, 2003

Comparative DNA Sequence Analysis of Mouse and Human Protocadherin Gene Clusters

  • Qiang Wu
  • Theresa Zhang
  • Jan-Fang Cheng
  • Youngwook Kim
  • Jane Grimwood
  • Jeremy Schmutz Mark Dickson
  • ... [+2 authors] ...,
  • James P. Noonan
  • Michael Q. Zhang
  • Richard M. Myers
  • Tom Maniatis
  • First Published March 1, 2001
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