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Cell-type selective chromatin remodeling defines the active subset of FOXA1-bound enhancers

Jérôme Eeckhoute
Mathieu Lupien
Clifford A. Meyer
Michael P. Verzi
Ramesh A. Shivdasani
X. Shirley Liu
Myles Brown

First Published January 7, 2009

E2F in vivo binding specificity: Comparison of consensus versus nonconsensus binding sites

Alina Rabinovich
Victor X. Jin
Roman Rabinovich
Xiaoqin Xu
Peggy J. Farnham

First Published October 3, 2008

Using ChIP-chip technology to reveal common principles of transcriptional repression in normal and cancer cells

Vitalina M. Komashko
Luis G. Acevedo
Sharon L. Squazzo
Sushma S. Iyengar
Alina Rabinovich
Henriette O’Geen
Roland Green
Peggy J. Farnham

First Published March 17, 2008

Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets

David S. Johnson
Wei Li
D. Benjamin Gordon
Arindam Bhattacharjee
Bo Curry
Jayati Ghosh Leonardo Brizuela Jason S. Carroll Myles Brown Paul Flicek Christoph M. Koch Ian Dunham Mark Bieda Xiaoqin Xu Peggy J. Farnham Philipp Kapranov David A. Nix Thomas R. Gingeras Xinmin Zhang Heather Holster Nan Jiang Roland D. Green Jun S. Song Scott A. McCuine Elizabeth Anton Loan Nguyen Nathan D. Trinklein Zhen Ye Keith Ching David Hawkins Bing Ren Peter C. Scacheri Joel Rozowsky Alexander Karpikov Ghia Euskirchen Sherman Weissman Mark Gerstein Michael Snyder Annie Yang Zarmik Moqtaderi Heather Hirsch Hennady P. Shulha Yutao Fu Zhiping Weng
... [+39 authors] ...,
Kevin Struhl
Richard M. Myers
Jason D. Lieb
X. Shirley Liu

First Published February 7, 2008

Identification of an OCT4 and SRY regulatory module using integrated computational and experimental genomics approaches

Victor X. Jin
Henriette O’Geen
Sushma Iyengar
Roland Green
Peggy J. Farnham

First Published June 13, 2007

cis-regulatory modules from chromatin immunoprecipitation microarray data—A case study using E2F1" > A computational genomics approach to identify cis-regulatory modules from chromatin immunoprecipitation microarray data—A case study using E2F1

Victor X. Jin
Alina Rabinovich
Sharon L. Squazzo
Roland Green
Peggy J. Farnham

First Published October 19, 2006

Suz12 binds to silenced regions of the genome in a cell-type-specific manner

Sharon L. Squazzo
Henriette O’Geen
Vitalina M. Komashko
Sheryl R. Krig
Victor X. Jin
Sung-wook Jang
... [+1 authors] ...,
Raphael Margueron
Danny Reinberg
Roland Green
Peggy J. Farnham

First Published June 2, 2006

Unbiased location analysis of E2F1-binding sites suggests a widespread role for E2F1 in the human genome

Mark Bieda
Xiaoqin Xu
Michael A. Singer
Roland Green
Peggy J. Farnham

First Published April 10, 2006