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LETTER

A genomic analysis of RNA polymerase II modification and chromatin architecture related to 3′ end RNA polyadenylation

  • Zheng Lian
  • Alexander Karpikov
  • Jin Lian
  • Milind C. Mahajan
  • Stephen Hartman
  • Mark Gerstein
  • Michael Snyder
  • Sherman M. Weissman
  • First Published May 16, 2008
LETTER

Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets

  • David S. Johnson
  • Wei Li
  • D. Benjamin Gordon
  • Arindam Bhattacharjee
  • Bo Curry
  • Jayati Ghosh Leonardo Brizuela Jason S. Carroll Myles Brown Paul Flicek Christoph M. Koch Ian Dunham Mark Bieda Xiaoqin Xu Peggy J. Farnham Philipp Kapranov David A. Nix Thomas R. Gingeras Xinmin Zhang Heather Holster Nan Jiang Roland D. Green Jun S. Song Scott A. McCuine Elizabeth Anton Loan Nguyen Nathan D. Trinklein Zhen Ye Keith Ching David Hawkins Bing Ren Peter C. Scacheri Joel Rozowsky Alexander Karpikov Ghia Euskirchen Sherman Weissman Mark Gerstein Michael Snyder Annie Yang Zarmik Moqtaderi Heather Hirsch Hennady P. Shulha Yutao Fu Zhiping Weng
  • ... [+39 authors] ...,
  • Kevin Struhl
  • Richard M. Myers
  • Jason D. Lieb
  • X. Shirley Liu
  • First Published February 7, 2008
LETTER

Pseudogenes in the ENCODE regions: Consensus annotation, analysis of transcription, and evolution

  • Deyou Zheng
  • Adam Frankish
  • Robert Baertsch
  • Philipp Kapranov
  • Alexandre Reymond
  • Siew Woh Choo Yontao Lu France Denoeud Stylianos E. Antonarakis Michael Snyder Yijun Ruan Chia-Lin Wei
  • ... [+7 authors] ...,
  • Thomas R. Gingeras
  • Roderic Guigó
  • Jennifer Harrow
  • Mark B. Gerstein
  • First Published June 13, 2007
LETTER

Structured RNAs in the ENCODE selected regions of the human genome

  • Stefan Washietl
  • Jakob S. Pedersen
  • Jan O. Korbel
  • Claudia Stocsits
  • Andreas R. Gruber
  • Jörg Hackermüller Jana Hertel Manja Lindemeyer Kristin Reiche Andrea Tanzer Catherine Ucla Carine Wyss Stylianos E. Antonarakis France Denoeud Julien Lagarde Jorg Drenkow Philipp Kapranov Thomas R. Gingeras Roderic Guigó Michael Snyder
  • ... [+15 authors] ...,
  • Mark B. Gerstein
  • Alexandre Reymond
  • Ivo L. Hofacker
  • Peter F. Stadler
  • First Published June 13, 2007
LETTER

Tandem chimerism as a means to increase protein complexity in the human genome

  • Genís Parra
  • Alexandre Reymond
  • Noura Dabbouseh
  • Emmanouil T. Dermitzakis
  • Robert Castelo
  • Timothy M. Thomson
  • Stylianos E. Antonarakis
  • Roderic Guigó
  • First Published December 12, 2005
LETTER

Assessing the limits of genomic data integration for predicting protein networks

  • Long J. Lu
  • Yu Xia
  • Alberto Paccanaro
  • Haiyuan Yu
  • Mark Gerstein
  • First Published July 5, 2005
LETTER

Multi-species microarrays reveal the effect of sequence divergence on gene expression profiles

  • Yoav Gilad
  • Scott A. Rifkin
  • Paul Bertone
  • Mark Gerstein
  • Kevin P. White
  • First Published May 2, 2005
Chicken Special/Letters

Comparison of splice sites in mammals and chicken

  • Josep F. Abril
  • Robert Castelo
  • Roderic Guigó
  • First Published December 8, 2004
LETTER

Comparative Analysis of Amino Acid Repeats in Rodents and Humans

  • M. Mar Albà
  • Roderic Guigó
  • First Published April 1, 2004
LETTER

Millions of Years of Evolution Preserved: A Comprehensive Catalog of the Processed Pseudogenes in the Human Genome

  • Zhaolei Zhang
  • Paul M. Harrison
  • Yin Liu
  • Mark Gerstein
  • First Published December 1, 2003
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