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LETTER

A genomic analysis of RNA polymerase II modification and chromatin architecture related to 3′ end RNA polyadenylation

  • Zheng Lian
  • Alexander Karpikov
  • Jin Lian
  • Milind C. Mahajan
  • Stephen Hartman
  • Mark Gerstein
  • Michael Snyder
  • Sherman M. Weissman
  • First Published May 16, 2008
LETTER

Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets

  • David S. Johnson
  • Wei Li
  • D. Benjamin Gordon
  • Arindam Bhattacharjee
  • Bo Curry
  • Jayati Ghosh Leonardo Brizuela Jason S. Carroll Myles Brown Paul Flicek Christoph M. Koch Ian Dunham Mark Bieda Xiaoqin Xu Peggy J. Farnham Philipp Kapranov David A. Nix Thomas R. Gingeras Xinmin Zhang Heather Holster Nan Jiang Roland D. Green Jun S. Song Scott A. McCuine Elizabeth Anton Loan Nguyen Nathan D. Trinklein Zhen Ye Keith Ching David Hawkins Bing Ren Peter C. Scacheri Joel Rozowsky Alexander Karpikov Ghia Euskirchen Sherman Weissman Mark Gerstein Michael Snyder Annie Yang Zarmik Moqtaderi Heather Hirsch Hennady P. Shulha Yutao Fu Zhiping Weng
  • ... [+39 authors] ...,
  • Kevin Struhl
  • Richard M. Myers
  • Jason D. Lieb
  • X. Shirley Liu
  • First Published February 7, 2008
LETTER

Assessing the limits of genomic data integration for predicting protein networks

  • Long J. Lu
  • Yu Xia
  • Alberto Paccanaro
  • Haiyuan Yu
  • Mark Gerstein
  • First Published July 5, 2005
LETTER

Multi-species microarrays reveal the effect of sequence divergence on gene expression profiles

  • Yoav Gilad
  • Scott A. Rifkin
  • Paul Bertone
  • Mark Gerstein
  • Kevin P. White
  • First Published May 2, 2005
LETTER

Millions of Years of Evolution Preserved: A Comprehensive Catalog of the Processed Pseudogenes in the Human Genome

  • Zhaolei Zhang
  • Paul M. Harrison
  • Yin Liu
  • Mark Gerstein
  • First Published December 1, 2003
LETTER

Quantitative Estimates of Sequence Divergence for Comparative Analyses of Mammalian Genomes

  • Gregory M. Cooper
  • Michael Brudno
  • NISC Comparative Sequencing Program
  • Eric D. Green
  • Serafim Batzoglou
  • Arend Sidow
  • First Published May 1, 2003
LETTER

Analysis of Primate Genomic Variation Reveals a Repeat-Driven Expansion of the Human Genome

  • Ge Liu
  • NISC Comparative Sequencing Program
  • Shaying Zhao
  • Jeffrey A. Bailey
  • S. Cenk Sahinalp
  • Can Alkan
  • Eray Tuzun
  • Eric D. Green
  • Evan E. Eichler
  • First Published March 1, 2003
LETTER

Pericentromeric Duplications in the Laboratory Mouse

  • James W. Thomas
  • Mary G. Schueler
  • Tyrone J. Summers
  • Robert W. Blakesley
  • Jennifer C. McDowell
  • Pamela J. Thomas Jacquelyn R. Idol Valerie V.B. Maduro Shih-Queen Lee-Lin Jeffrey W. Touchman
  • ... [+5 authors] ...,
  • Gerard G. Bouffard
  • Stephen M. Beckstrom-Sternberg
  • NISC Comparative Sequencing Program
  • Eric D. Green
  • First Published December 30, 2002
LETTER

Systematic Learning of Gene Functional Classes From DNA Array Expression Data by Using Multilayer Perceptrons

  • Alvaro Mateos
  • Joaquı́n Dopazo
  • Ronald Jansen
  • Yuhai Tu
  • Mark Gerstein
  • Gustavo Stolovitzky
  • First Published November 1, 2002
LETTER

Molecular Fossils in the Human Genome: Identification and Analysis of the Pseudogenes in Chromosomes 21 and 22

  • Paul M. Harrison
  • Hedi Hegyi
  • Suganthi Balasubramanian
  • Nicholas M. Luscombe
  • Paul Bertone
  • Nathaniel Echols
  • Ted Johnson
  • Mark Gerstein
  • First Published February 1, 2002
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