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Do genetic recombination and gene density shape the pattern of DNA elimination in rice long terminal repeat retrotransposons?

  • Zhixi Tian
  • Carene Rizzon
  • Jianchang Du
  • Liucun Zhu
  • Jeffrey L. Bennetzen
  • Scott A. Jackson
  • Brandon S. Gaut
  • Jianxin Ma
  • First Published September 29, 2009
LETTER

Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets

  • David S. Johnson
  • Wei Li
  • D. Benjamin Gordon
  • Arindam Bhattacharjee
  • Bo Curry
  • Jayati Ghosh Leonardo Brizuela Jason S. Carroll Myles Brown Paul Flicek Christoph M. Koch Ian Dunham Mark Bieda Xiaoqin Xu Peggy J. Farnham Philipp Kapranov David A. Nix Thomas R. Gingeras Xinmin Zhang Heather Holster Nan Jiang Roland D. Green Jun S. Song Scott A. McCuine Elizabeth Anton Loan Nguyen Nathan D. Trinklein Zhen Ye Keith Ching David Hawkins Bing Ren Peter C. Scacheri Joel Rozowsky Alexander Karpikov Ghia Euskirchen Sherman Weissman Mark Gerstein Michael Snyder Annie Yang Zarmik Moqtaderi Heather Hirsch Hennady P. Shulha Yutao Fu Zhiping Weng
  • ... [+39 authors] ...,
  • Kevin Struhl
  • Richard M. Myers
  • Jason D. Lieb
  • X. Shirley Liu
  • First Published February 7, 2008
LETTER

Nucleosome positioning signals in genomic DNA

  • Heather E. Peckham
  • Robert E. Thurman
  • Yutao Fu
  • John A. Stamatoyannopoulos
  • William Stafford Noble
  • Kevin Struhl
  • Zhiping Weng
  • First Published July 9, 2007
LETTER

Statistical analysis of the genomic distribution and correlation of regulatory elements in the ENCODE regions

  • Zhengdong D. Zhang
  • Alberto Paccanaro
  • Yutao Fu
  • Sherman Weissman
  • Zhiping Weng
  • Joseph Chang
  • Michael Snyder
  • Mark B. Gerstein
  • First Published June 13, 2007
LETTER

Analysis of overrepresented motifs in human core promoters reveals dual regulatory roles of YY1

  • Hualin Xi
  • Yong Yu
  • Yutao Fu
  • Jonathan Foley
  • Anason Halees
  • Zhiping Weng
  • First Published June 13, 2007
LETTER

Transcription factor binding and modified histones in human bidirectional promoters

  • Jane M. Lin
  • Patrick J. Collins
  • Nathan D. Trinklein
  • Yutao Fu
  • Hualin Xi
  • Richard M. Myers
  • Zhiping Weng
  • First Published June 13, 2007
LETTER

Retrotransposon accumulation and satellite amplification mediated by segmental duplication facilitate centromere expansion in rice

  • Jianxin Ma
  • Scott A. Jackson
  • First Published December 14, 2005
LETTER

Close Split of Sorghum and Maize Genome Progenitors

  • Zuzana Swigoňová
  • Jinsheng Lai
  • Jianxin Ma
  • Wusirika Ramakrishna
  • Victor Llaca
  • Jeffrey L. Bennetzen
  • Joachim Messing
  • First Published October 1, 2004
LETTER

Gene Loss and Movement in the Maize Genome

  • Jinsheng Lai
  • Jianxin Ma
  • Zuzana Swigoňová
  • Wusirika Ramakrishna
  • Eric Linton
  • Victor Llaca Bahattin Tanyolac
  • ... [+2 authors] ...,
  • Yong-Jin Park
  • O-Young Jeong
  • Jeffrey L. Bennetzen
  • Joachim Messing
  • First Published October 1, 2004
LETTER

Analyses of LTR-Retrotransposon Structures Reveal Recent and Rapid Genomic DNA Loss in Rice

  • Jianxin Ma
  • Katrien M. Devos
  • Jeffrey L. Bennetzen
  • First Published April 12, 2004
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