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Ride the wavelet: A multiscale analysis of genomic contexts flanking small insertions and deletions

Erika M. Kvikstad
Francesca Chiaromonte
Kateryna D. Makova

First Published June 5, 2009

Evolutionary descent of a human chromosome 6 neocentromere: A jump back to 17 million years ago

Oronzo Capozzi
Stefania Purgato
Pietro D'Addabbo
Nicoletta Archidiacono
Paola Battaglia
Anna Baroncini
... [+1 authors] ...,
Antonella Capucci
Roscoe Stanyon
Giuliano Della Valle
Mariano Rocchi

First Published May 1, 2009

Sequencing human–gibbon breakpoints of synteny reveals mosaic new insertions at rearrangement sites

Santhosh Girirajan
Lin Chen
Tina Graves
Tomas Marques-Bonet
Mario Ventura
Catrina Fronick Lucinda Fulton Mariano Rocchi
... [+3 authors] ...,
Robert S. Fulton
Richard K. Wilson
Elaine R. Mardis
Evan E. Eichler

First Published November 24, 2008

Transcriptional enhancement by GATA1-occupied DNA segments is strongly associated with evolutionary constraint on the binding site motif

Yong Cheng
David C. King
Louis C. Dore
Xinmin Zhang
Yuepin Zhou
Ying Zhang Christine Dorman Demesew Abebe Swathi A. Kumar Francesca Chiaromonte
... [+5 authors] ...,
Webb Miller
Roland D. Green
Mitchell J. Weiss
Ross C. Hardison

First Published September 25, 2008

The genome-wide determinants of human and chimpanzee microsatellite evolution

Yogeshwar D. Kelkar
Svitlana Tyekucheva
Francesca Chiaromonte
Kateryna D. Makova

First Published November 21, 2007

cis-regulatory elements using comparative genomics: Some lessons from ENCODE data" > Finding cis-regulatory elements using comparative genomics: Some lessons from ENCODE data

David C. King
James Taylor
Ying Zhang
Yong Cheng
Heather A. Lawson
Joel Martin
Francesca Chiaromonte
Webb Miller
Ross C. Hardison

First Published June 13, 2007

cis-regulatory modules" > Experimental validation of predicted mammalian erythroid cis-regulatory modules

Hao Wang
Ying Zhang
Yong Cheng
Yuepin Zhou
David C. King
James Taylor Francesca Chiaromonte Jyotsna Kasturi Hanna Petrykowska Brian Gibb Christine Dorman Webb Miller
... [+7 authors] ...,
Louis C. Dore
John Welch
Mitchell J. Weiss
Ross C. Hardison

First Published October 12, 2006

A preliminary comparative analysis of primate segmental duplications shows elevated substitution rates and a great-ape expansion of intrachromosomal duplications

Xinwei She
Ge Liu
Mario Ventura
Shaying Zhao
Doriana Misceo
Roberta Roberto Maria Francesca Cardone
... [+2 authors] ...,
Mariano Rocchi
Eric D. Green
Nicoletta Archidiacano
Evan E. Eichler

First Published April 10, 2006

A genome-wide survey of structural variation between human and chimpanzee

Tera L. Newman
Eray Tuzun
V. Anne Morrison
Karen E. Hayden
Mario Ventura
Sean D. McGrath
Mariano Rocchi
Evan E. Eichler

First Published September 16, 2005

cis-regulatory modules in aligned mammalian genome sequences" > Evaluation of regulatory potential and conservation scores for detecting cis-regulatory modules in aligned mammalian genome sequences

David C. King
James Taylor
Laura Elnitski
Francesca Chiaromonte
Webb Miller
Ross C. Hardison

First Published July 15, 2005

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