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Functional diversity for REST (NRSF) is defined by in vivo binding affinity hierarchies at the DNA sequence level

Alexander W. Bruce
Andrés J. López-Contreras
Paul Flicek
Thomas A. Down
Pawandeep Dhami
Shane C. Dillon Christoph M. Koch
... [+2 authors] ...,
Cordelia F. Langford
Ian Dunham
Robert M. Andrews
David Vetrie

First Published April 28, 2009

A systematic analysis of intronic sequences downstream of 5′ splice sites reveals a widespread role for U-rich motifs and TIA1/TIAL1 proteins in alternative splicing regulation

Isabel Aznarez
Yoseph Barash
Ofer Shai
David He
Julian Zielenski
Lap-Chee Tsui
... [+1 authors] ...,
John Parkinson
Brendan J. Frey
Johanna M. Rommens
Benjamin J. Blencowe

First Published May 2, 2008

Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets

David S. Johnson
Wei Li
D. Benjamin Gordon
Arindam Bhattacharjee
Bo Curry
Jayati Ghosh Leonardo Brizuela Jason S. Carroll Myles Brown Paul Flicek Christoph M. Koch Ian Dunham Mark Bieda Xiaoqin Xu Peggy J. Farnham Philipp Kapranov David A. Nix Thomas R. Gingeras Xinmin Zhang Heather Holster Nan Jiang Roland D. Green Jun S. Song Scott A. McCuine Elizabeth Anton Loan Nguyen Nathan D. Trinklein Zhen Ye Keith Ching David Hawkins Bing Ren Peter C. Scacheri Joel Rozowsky Alexander Karpikov Ghia Euskirchen Sherman Weissman Mark Gerstein Michael Snyder Annie Yang Zarmik Moqtaderi Heather Hirsch Hennady P. Shulha Yutao Fu Zhiping Weng
... [+39 authors] ...,
Kevin Struhl
Richard M. Myers
Jason D. Lieb
X. Shirley Liu

First Published February 7, 2008

Leveraging the Mouse Genome for Gene Prediction in Human: From Whole-Genome Shotgun Reads to a Global Synteny Map

Paul Flicek
Evan Keibler
Ping Hu
Ian Korf
Michael R. Brent

First Published January 1, 2003