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A genomic analysis of RNA polymerase II modification and chromatin architecture related to 3′ end RNA polyadenylation

Zheng Lian
Alexander Karpikov
Jin Lian
Milind C. Mahajan
Stephen Hartman
Mark Gerstein
Michael Snyder
Sherman M. Weissman

First Published May 16, 2008

Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets

David S. Johnson
Wei Li
D. Benjamin Gordon
Arindam Bhattacharjee
Bo Curry
Jayati Ghosh Leonardo Brizuela Jason S. Carroll Myles Brown Paul Flicek Christoph M. Koch Ian Dunham Mark Bieda Xiaoqin Xu Peggy J. Farnham Philipp Kapranov David A. Nix Thomas R. Gingeras Xinmin Zhang Heather Holster Nan Jiang Roland D. Green Jun S. Song Scott A. McCuine Elizabeth Anton Loan Nguyen Nathan D. Trinklein Zhen Ye Keith Ching David Hawkins Bing Ren Peter C. Scacheri Joel Rozowsky Alexander Karpikov Ghia Euskirchen Sherman Weissman Mark Gerstein Michael Snyder Annie Yang Zarmik Moqtaderi Heather Hirsch Hennady P. Shulha Yutao Fu Zhiping Weng
... [+39 authors] ...,
Kevin Struhl
Richard M. Myers
Jason D. Lieb
X. Shirley Liu

First Published February 7, 2008

Assessing the limits of genomic data integration for predicting protein networks

Long J. Lu
Yu Xia
Alberto Paccanaro
Haiyuan Yu
Mark Gerstein

First Published July 5, 2005

Multi-species microarrays reveal the effect of sequence divergence on gene expression profiles

Yoav Gilad
Scott A. Rifkin
Paul Bertone
Mark Gerstein
Kevin P. White

First Published May 2, 2005

Millions of Years of Evolution Preserved: A Comprehensive Catalog of the Processed Pseudogenes in the Human Genome

Zhaolei Zhang
Paul M. Harrison
Yin Liu
Mark Gerstein

First Published December 1, 2003

Systematic Learning of Gene Functional Classes From DNA Array Expression Data by Using Multilayer Perceptrons

Alvaro Mateos
Joaquı́n Dopazo
Ronald Jansen
Yuhai Tu
Mark Gerstein
Gustavo Stolovitzky

First Published November 1, 2002

Molecular Fossils in the Human Genome: Identification and Analysis of the Pseudogenes in Chromosomes 21 and 22

Paul M. Harrison
Hedi Hegyi
Suganthi Balasubramanian
Nicholas M. Luscombe
Paul Bertone
Nathaniel Echols
Ted Johnson
Mark Gerstein

First Published February 1, 2002

Relating Whole-Genome Expression Data with Protein-Protein Interactions

Ronald Jansen
Dov Greenbaum
Mark Gerstein

First Published January 1, 2002

Annotation Transfer for Genomics: Measuring Functional Divergence in Multi-Domain Proteins

Hedi Hegyi
Mark Gerstein

First Published October 1, 2001

Whole-genome Trees Based on the Occurrence of Folds and Orthologs: Implications for Comparing Genomes on Different Levels

Jimmy Lin
Mark Gerstein

First Published June 1, 2000