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LETTER

Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets

  • David S. Johnson
  • Wei Li
  • D. Benjamin Gordon
  • Arindam Bhattacharjee
  • Bo Curry
  • Jayati Ghosh Leonardo Brizuela Jason S. Carroll Myles Brown Paul Flicek Christoph M. Koch Ian Dunham Mark Bieda Xiaoqin Xu Peggy J. Farnham Philipp Kapranov David A. Nix Thomas R. Gingeras Xinmin Zhang Heather Holster Nan Jiang Roland D. Green Jun S. Song Scott A. McCuine Elizabeth Anton Loan Nguyen Nathan D. Trinklein Zhen Ye Keith Ching David Hawkins Bing Ren Peter C. Scacheri Joel Rozowsky Alexander Karpikov Ghia Euskirchen Sherman Weissman Mark Gerstein Michael Snyder Annie Yang Zarmik Moqtaderi Heather Hirsch Hennady P. Shulha Yutao Fu Zhiping Weng
  • ... [+39 authors] ...,
  • Kevin Struhl
  • Richard M. Myers
  • Jason D. Lieb
  • X. Shirley Liu
  • First Published February 7, 2008
LETTER

Nucleosome positioning signals in genomic DNA

  • Heather E. Peckham
  • Robert E. Thurman
  • Yutao Fu
  • John A. Stamatoyannopoulos
  • William Stafford Noble
  • Kevin Struhl
  • Zhiping Weng
  • First Published July 9, 2007
LETTER

Statistical analysis of the genomic distribution and correlation of regulatory elements in the ENCODE regions

  • Zhengdong D. Zhang
  • Alberto Paccanaro
  • Yutao Fu
  • Sherman Weissman
  • Zhiping Weng
  • Joseph Chang
  • Michael Snyder
  • Mark B. Gerstein
  • First Published June 13, 2007
LETTER

Structured RNAs in the ENCODE selected regions of the human genome

  • Stefan Washietl
  • Jakob S. Pedersen
  • Jan O. Korbel
  • Claudia Stocsits
  • Andreas R. Gruber
  • Jörg Hackermüller Jana Hertel Manja Lindemeyer Kristin Reiche Andrea Tanzer Catherine Ucla Carine Wyss Stylianos E. Antonarakis France Denoeud Julien Lagarde Jorg Drenkow Philipp Kapranov Thomas R. Gingeras Roderic Guigó Michael Snyder
  • ... [+15 authors] ...,
  • Mark B. Gerstein
  • Alexandre Reymond
  • Ivo L. Hofacker
  • Peter F. Stadler
  • First Published June 13, 2007
LETTER

Transcription factor binding and modified histones in human bidirectional promoters

  • Jane M. Lin
  • Patrick J. Collins
  • Nathan D. Trinklein
  • Yutao Fu
  • Hualin Xi
  • Richard M. Myers
  • Zhiping Weng
  • First Published June 13, 2007
LETTER

Pseudogenes in the ENCODE regions: Consensus annotation, analysis of transcription, and evolution

  • Deyou Zheng
  • Adam Frankish
  • Robert Baertsch
  • Philipp Kapranov
  • Alexandre Reymond
  • Siew Woh Choo Yontao Lu France Denoeud Stylianos E. Antonarakis Michael Snyder Yijun Ruan Chia-Lin Wei
  • ... [+7 authors] ...,
  • Thomas R. Gingeras
  • Roderic Guigó
  • Jennifer Harrow
  • Mark B. Gerstein
  • First Published June 13, 2007
LETTER

Analysis of overrepresented motifs in human core promoters reveals dual regulatory roles of YY1

  • Hualin Xi
  • Yong Yu
  • Yutao Fu
  • Jonathan Foley
  • Anason Halees
  • Zhiping Weng
  • First Published June 13, 2007
LETTER

Tandem chimerism as a means to increase protein complexity in the human genome

  • Genís Parra
  • Alexandre Reymond
  • Noura Dabbouseh
  • Emmanouil T. Dermitzakis
  • Robert Castelo
  • Timothy M. Thomson
  • Stylianos E. Antonarakis
  • Roderic Guigó
  • First Published December 12, 2005
LETTER

Comparative Analysis of Amino Acid Repeats in Rodents and Humans

  • M. Mar Albà
  • Roderic Guigó
  • First Published April 1, 2004
LETTER

Kua, a Newly Identified Gene" > Fusion of the Human Gene for the Polyubiquitination Coeffector UEV1 with Kua, a Newly Identified Gene

  • Timothy M. Thomson
  • Juan José Lozano
  • Noureddine Loukili
  • Roberto Carrió
  • Florenci Serras
  • Bru Cormand Marta Valeri Vı́ctor M. Dı́az Josep Abril Moisés Burset
  • ... [+5 authors] ...,
  • Jesús Merino
  • Alfons Macaya
  • Montserrat Corominas
  • Roderic Guigó
  • First Published November 8, 2000
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