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LETTER

Massively parallel bisulphite pyrosequencing reveals the molecular complexity of breast cancer-associated cytosine-methylation patterns obtained from tissue and serum DNA

  • Yulia Korshunova
  • Rebecca K. Maloney
  • Nathan Lakey
  • Robert W. Citek
  • Blaire Bacher
  • Arief Budiman Jared M. Ordway
  • ... [+2 authors] ...,
  • W. Richard McCombie
  • Jorge Leon
  • Jeffrey A. Jeddeloh
  • John D. McPherson
  • First Published November 21, 2007
LETTER

Structured RNAs in the ENCODE selected regions of the human genome

  • Stefan Washietl
  • Jakob S. Pedersen
  • Jan O. Korbel
  • Claudia Stocsits
  • Andreas R. Gruber
  • Jörg Hackermüller Jana Hertel Manja Lindemeyer Kristin Reiche Andrea Tanzer Catherine Ucla Carine Wyss Stylianos E. Antonarakis France Denoeud Julien Lagarde Jorg Drenkow Philipp Kapranov Thomas R. Gingeras Roderic Guigó Michael Snyder
  • ... [+15 authors] ...,
  • Mark B. Gerstein
  • Alexandre Reymond
  • Ivo L. Hofacker
  • Peter F. Stadler
  • First Published June 13, 2007
LETTER

Pseudogenes in the ENCODE regions: Consensus annotation, analysis of transcription, and evolution

  • Deyou Zheng
  • Adam Frankish
  • Robert Baertsch
  • Philipp Kapranov
  • Alexandre Reymond
  • Siew Woh Choo Yontao Lu France Denoeud Stylianos E. Antonarakis Michael Snyder Yijun Ruan Chia-Lin Wei
  • ... [+7 authors] ...,
  • Thomas R. Gingeras
  • Roderic Guigó
  • Jennifer Harrow
  • Mark B. Gerstein
  • First Published June 13, 2007
LETTER

Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana" > Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana

  • Takeshi Itoh
  • Tsuyoshi Tanaka
  • Roberto A. Barrero
  • Chisato Yamasaki
  • Yasuyuki Fujii
  • Phillip B. Hilton Baltazar A. Antonio Hideo Aono Rolf Apweiler Richard Bruskiewich Thomas Bureau Frances Burr Antonio Costa de Oliveira Galina Fuks Takuya Habara Georg Haberer Bin Han Erimi Harada Aiko T. Hiraki Hirohiko Hirochika Douglas Hoen Hiroki Hokari Satomi Hosokawa Yue Hsing Hiroshi Ikawa Kazuho Ikeo Tadashi Imanishi Yukiyo Ito Pankaj Jaiswal Masako Kanno Yoshihiro Kawahara Toshiyuki Kawamura Hiroaki Kawashima Jitendra P. Khurana Shoshi Kikuchi Setsuko Komatsu Kanako O. Koyanagi Hiromi Kubooka Damien Lieberherr Yao-Cheng Lin David Lonsdale Takashi Matsumoto Akihiro Matsuya W. Richard McCombie Joachim Messing Akio Miyao Nicola Mulder Yoshiaki Nagamura Jongmin Nam Nobukazu Namiki Hisataka Numa Shin Nurimoto Claire O’Donovan Hajime Ohyanagi Toshihisa Okido Satoshi OOta Naoki Osato Lance E. Palmer Francis Quetier Saurabh Raghuvanshi Naomi Saichi Hiroaki Sakai Yasumichi Sakai Katsumi Sakata Tetsuya Sakurai Fumihiko Sato Yoshiharu Sato Heiko Schoof Motoaki Seki Michie Shibata Yuji Shimizu Kazuo Shinozaki Yuji Shinso Nagendra K. Singh Brian Smith-White Jun-ichi Takeda Motohiko Tanino Tatiana Tatusova Supat Thongjuea Fusano Todokoro Mika Tsugane Akhilesh K. Tyagi Apichart Vanavichit Aihui Wang Rod A. Wing Kaori Yamaguchi Mayu Yamamoto Naoyuki Yamamoto Yeisoo Yu Hao Zhang Qiang Zhao
  • ... [+86 authors] ...,
  • Kenichi Higo
  • Benjamin Burr
  • Takashi Gojobori
  • Takuji Sasaki
  • First Published January 8, 2007
LETTER

Tandem chimerism as a means to increase protein complexity in the human genome

  • Genís Parra
  • Alexandre Reymond
  • Noura Dabbouseh
  • Emmanouil T. Dermitzakis
  • Robert Castelo
  • Timothy M. Thomson
  • Stylianos E. Antonarakis
  • Roderic Guigó
  • First Published December 12, 2005
LETTER

Differential methylation of genes and repeats in land plants

  • Pablo D. Rabinowicz
  • Robert Citek
  • Muhammad A. Budiman
  • Andrew Nunberg
  • Joseph A. Bedell
  • Nathan Lakey
  • ... [+1 authors] ...,
  • Andrew L. O'Shaughnessy
  • Lidia U. Nascimento
  • W. Richard McCombie
  • Robert A. Martienssen
  • First Published October 3, 2005
LETTER

Brassica oleracea and Oryza sativa genome sequence for their ability to add to the annotation of Arabidopsis thaliana" > Comparing low coverage random shotgun sequence data from Brassica oleracea and Oryza sativa genome sequence for their ability to add to the annotation of Arabidopsis thaliana

  • Manpreet S. Katari
  • Vivekanand Balija
  • Richard K. Wilson
  • Robert A. Martienssen
  • W. Richard McCombie
  • First Published April 1, 2005
LETTER

The mouse genome: Experimental examination of gene predictions and transcriptional start sites

  • Sujit Dike
  • Vivekanand S. Balija
  • Lidia U. Nascimento
  • Zhenyu Xuan
  • Jacqueline Ou
  • Theresa Zutavern
  • ... [+1 authors] ...,
  • Lance E. Palmer
  • Greg Hannon
  • Michael Q. Zhang
  • W. Richard McCombie
  • First Published December 1, 2004
LETTER

Comparative Analysis of Amino Acid Repeats in Rodents and Humans

  • M. Mar Albà
  • Roderic Guigó
  • First Published April 1, 2004
LETTER

Genes and Transposons Are Differentially Methylated in Plants, but Not in Mammals

  • Pablo D. Rabinowicz
  • Lance E. Palmer
  • Bruce P. May
  • Michael T. Hemann
  • Scott W. Lowe
  • W. Richard McCombie
  • Robert A. Martienssen
  • First Published December 1, 2003
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