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ARTICLE

Integrated analysis of experimental data sets reveals many novel promoters in 1% of the human genome

  • Nathan D. Trinklein
  • Ulaş Karaöz
  • Jiaqian Wu
  • Anason Halees
  • Shelley Force Aldred
  • Patrick J. Collins Deyou Zheng Zhengdong D. Zhang
  • ... [+3 authors] ...,
  • Mark B. Gerstein
  • Michael Snyder
  • Richard M. Myers
  • Zhiping Weng
  • First Published June 13, 2007
ARTICLE

Prominent use of distal 5′ transcription start sites and discovery of a large number of additional exons in ENCODE regions

  • France Denoeud
  • Philipp Kapranov
  • Catherine Ucla
  • Adam Frankish
  • Robert Castelo
  • Jorg Drenkow Julien Lagarde Tyler Alioto Caroline Manzano Jacqueline Chrast Sujit Dike Carine Wyss Charlotte N. Henrichsen Nancy Holroyd Mark C. Dickson Ruth Taylor Zahra Hance Sylvain Foissac Richard M. Myers Jane Rogers Tim Hubbard Jennifer Harrow
  • ... [+17 authors] ...,
  • Roderic Guigó
  • Thomas R. Gingeras
  • Stylianos E. Antonarakis
  • Alexandre Reymond
  • First Published June 13, 2007
ARTICLE

Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome

  • Elliott H. Margulies
  • Gregory M. Cooper
  • George Asimenos
  • Daryl J. Thomas
  • Colin N. Dewey
  • Adam Siepel Ewan Birney Damian Keefe Ariel S. Schwartz Minmei Hou James Taylor Sergey Nikolaev Juan I. Montoya-Burgos Ari Löytynoja Simon Whelan Fabio Pardi Tim Massingham James B. Brown Peter Bickel Ian Holmes James C. Mullikin Abel Ureta-Vidal Benedict Paten Eric A. Stone Kate R. Rosenbloom W. James Kent Gerard G. Bouffard Xiaobin Guan Nancy F. Hansen Jacquelyn R. Idol Valerie V.B. Maduro Baishali Maskeri Jennifer C. McDowell Morgan Park Pamela J. Thomas Alice C. Young Robert W. Blakesley Donna M. Muzny Erica Sodergren David A. Wheeler Kim C. Worley Huaiyang Jiang George M. Weinstock Richard A. Gibbs Tina Graves Robert Fulton Elaine R. Mardis Richard K. Wilson Michele Clamp James Cuff Sante Gnerre David B. Jaffe Jean L. Chang Kerstin Lindblad-Toh Eric S. Lander Angie Hinrichs Heather Trumbower Hiram Clawson Ann Zweig Robert M. Kuhn Galt Barber Rachel Harte Donna Karolchik Matthew A. Field Richard A. Moore Carrie A. Matthewson Jacqueline E. Schein Marco A. Marra Stylianos E. Antonarakis Serafim Batzoglou Nick Goldman Ross Hardison David Haussler
  • ... [+68 authors] ...,
  • Webb Miller
  • Lior Pachter
  • Eric D. Green
  • Arend Sidow
  • First Published June 13, 2007
ARTICLE

Comprehensive analysis of transcriptional promoter structure and function in 1% of the human genome

  • Sara J. Cooper
  • Nathan D. Trinklein
  • Elizabeth D. Anton
  • Loan Nguyen
  • Richard M. Myers
  • First Published December 12, 2005
ARTICLE

Analysis of long-lived C. elegans daf-2 mutants using serial analysis of gene expression

  • Julius Halaschek-Wiener
  • Jaswinder S. Khattra
  • Sheldon McKay
  • Anatoli Pouzyrev
  • Jeff M. Stott
  • George S. Yang Robert A. Holt
  • ... [+2 authors] ...,
  • Steven J.M. Jones
  • Marco A. Marra
  • Angela R. Brooks-Wilson
  • Donald L. Riddle
  • First Published April 18, 2005
ARTICLE

Coelacanth genome sequence reveals the evolutionary history of vertebrate genes

  • James P. Noonan
  • Jane Grimwood
  • Joshua Danke
  • Jeremy Schmutz
  • Mark Dickson
  • Chris T. Amemiya
  • Richard M. Myers
  • First Published November 15, 2004
ARTICLE

Changes in Gene Expression Associated with Developmental Arrest and Longevity in Caenorhabditis elegans

  • Steven J.M. Jones
  • Donald L. Riddle
  • Anatoli T. Pouzyrev
  • Victor E. Velculescu
  • LaDeana Hillier
  • Sean R. Eddy
  • ... [+1 authors] ...,
  • Shawn L. Stricklin
  • David L. Baillie
  • Robert Waterston
  • Marco A. Marra
  • First Published July 12, 2001
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