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ARTICLE

Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome

  • Elliott H. Margulies
  • Gregory M. Cooper
  • George Asimenos
  • Daryl J. Thomas
  • Colin N. Dewey
  • Adam Siepel Ewan Birney Damian Keefe Ariel S. Schwartz Minmei Hou James Taylor Sergey Nikolaev Juan I. Montoya-Burgos Ari Löytynoja Simon Whelan Fabio Pardi Tim Massingham James B. Brown Peter Bickel Ian Holmes James C. Mullikin Abel Ureta-Vidal Benedict Paten Eric A. Stone Kate R. Rosenbloom W. James Kent Gerard G. Bouffard Xiaobin Guan Nancy F. Hansen Jacquelyn R. Idol Valerie V.B. Maduro Baishali Maskeri Jennifer C. McDowell Morgan Park Pamela J. Thomas Alice C. Young Robert W. Blakesley Donna M. Muzny Erica Sodergren David A. Wheeler Kim C. Worley Huaiyang Jiang George M. Weinstock Richard A. Gibbs Tina Graves Robert Fulton Elaine R. Mardis Richard K. Wilson Michele Clamp James Cuff Sante Gnerre David B. Jaffe Jean L. Chang Kerstin Lindblad-Toh Eric S. Lander Angie Hinrichs Heather Trumbower Hiram Clawson Ann Zweig Robert M. Kuhn Galt Barber Rachel Harte Donna Karolchik Matthew A. Field Richard A. Moore Carrie A. Matthewson Jacqueline E. Schein Marco A. Marra Stylianos E. Antonarakis Serafim Batzoglou Nick Goldman Ross Hardison David Haussler
  • ... [+68 authors] ...,
  • Webb Miller
  • Lior Pachter
  • Eric D. Green
  • Arend Sidow
  • First Published June 13, 2007
ARTICLE

Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

  • Adam Siepel
  • Gill Bejerano
  • Jakob S. Pedersen
  • Angie S. Hinrichs
  • Minmei Hou
  • Kate Rosenbloom Hiram Clawson John Spieth LaDeana W. Hillier Stephen Richards George M. Weinstock Richard K. Wilson
  • ... [+7 authors] ...,
  • Richard A. Gibbs
  • W. James Kent
  • Webb Miller
  • David Haussler
  • First Published July 15, 2005
ARTICLE

Patterns of Insertions and Their Covariation With Substitutions in the Rat, Mouse, and Human Genomes

  • Shan Yang
  • Arian F. Smit
  • Scott Schwartz
  • Francesca Chiaromonte
  • Krishna M. Roskin
  • David Haussler
  • Webb Miller
  • Ross C. Hardison
  • First Published April 1, 2004
ARTICLE

Comparative Recombination Rates in the Rat, Mouse, and Human Genomes

  • Michael I. Jensen-Seaman
  • Terrence S. Furey
  • Bret A. Payseur
  • Yontao Lu
  • Krishna M. Roskin
  • Chin-Fu Chen
  • Michael A. Thomas
  • David Haussler
  • Howard J. Jacob
  • First Published April 1, 2004
ARTICLE

Identification and Characterization of Multi-Species Conserved Sequences

  • Elliott H. Margulies
  • Mathieu Blanchette
  • David Haussler
  • Eric D. Green
  • First Published December 1, 2003
ARTICLE

Archaea Methanogenium frigidum and Methanococcoides burtonii" > Mechanisms of Thermal Adaptation Revealed From the Genomes of the Antarctic Archaea Methanogenium frigidum and Methanococcoides burtonii

  • Neil F.W. Saunders
  • Torsten Thomas
  • Paul M.G. Curmi
  • John S. Mattick
  • Elizabeth Kuczek
  • Rob Slade John Davis Peter D. Franzmann David Boone Karl Rusterholtz Robert Feldman Chris Gates Shellie Bench Kevin Sowers Kristen Kadner Andrea Aerts Paramvir Dehal Chris Detter Tijana Glavina Susan Lucas Paul Richardson
  • ... [+16 authors] ...,
  • Frank Larimer
  • Loren Hauser
  • Miriam Land
  • Ricardo Cavicchioli
  • First Published June 12, 2003
ARTICLE

Covariation in Frequencies of Substitution, Deletion, Transposition, and Recombination During Eutherian Evolution

  • Ross C. Hardison
  • Krishna M. Roskin
  • Shan Yang
  • Mark Diekhans
  • W. James Kent
  • Ryan Weber Laura Elnitski Jia Li Michael O'Connor Diana Kolbe Scott Schwartz Terrence S. Furey Simon Whelan Nick Goldman
  • ... [+9 authors] ...,
  • Arian Smit
  • Webb Miller
  • Francesca Chiaromonte
  • David Haussler
  • First Published January 1, 2003
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