Searching journal content for articles similar to Zhou et al. 30 (3): 392.

Displaying results 1-10 of 32

For checked items

view abstracts
download to citation manager

Select this article
Research: Xylem systems genetics analysis reveals a key regulator of lignin biosynthesis in Populus deltoides
- Kelly M. Balmant,
- Jerald D. Noble,
- Filipe C. Alves,
- Christopher Dervinis,
- Daniel Conde,
- Henry W. Schmidt,
- Ana I. Vazquez,
- William B. Barbazuk,
- Gustavo de los Campos,
- Marcio F.R. Resende, Jr.,
- and Matias Kirst
Genome Res. August 2020 30: 1131-1143; Published in Advance August 19, 2020, doi:10.1101/gr.261438.120
...: mkirst@ufl.eduAbstractDespite the growing resources and tools for high-throughput characterization and analysis of genomic information, the discovery of the genetic elements that regulate complex traits remains a challenge. Systems genetics is an emerging field that aims to understand the flow...
Select this article
Resource: Gene expression networks in the Drosophila Genetic Reference Panel
- Logan J. Everett,
- Wen Huang,
- Shanshan Zhou,
- Mary Anna Carbone,
- Richard F. Lyman,
- Gunjan H. Arya,
- Matthew S. Geisz,
- Junwu Ma,
- Fabio Morgante,
- Genevieve St. Armour,
- Lavanya Turlapati,
- Robert R.H. Anholt,
- and Trudy F.C. Mackay
Genome Res. March 2020 30: 485-496; Published in Advance March 6, 2020, doi:10.1101/gr.257592.119
...to be accommodated in systems genetic modeling, at least at the level of gene expression.MethodsDrosophila linesWe used 200 inbred, sequenced DGRP lines (Mackay et al. 2012; Huang et al. 2014) established by 20 generations of full sib inbreeding from gravid females collected at the Raleigh, North Carolina, Farmer...
OPEN ACCESS ARTICLE
Select this article
Research: Circadian gene variants and the skeletal muscle circadian clock contribute to the evolutionary divergence in longevity across Drosophila populations
- Liam C. Hunt,
- Jianqin Jiao,
- Yong-Dong Wang,
- David Finkelstein,
- Deepti Rao,
- Michelle Curley,
- Maricela Robles-Murguia,
- Abbas Shirinifard,
- Vishwajeeth R. Pagala,
- Junmin Peng,
- Yiping Fan,
- and Fabio Demontis
Genome Res. August 2019 29: 1262-1276; Published in Advance June 27, 2019, doi:10.1101/gr.246884.118
...; Demontis et al. 2013a, 2014; Keipert et al. 2013; Stenesen et al. 2013; Rai and Demontis 2016). The progressive functional deterioration of skeletal muscle starts from an early age and precedes the age-related systemic decline in proteostasis and tissue integrity in Drosophila (Demontis and Perrimon 2010...
Select this article
Research: Dynamic A-to-I RNA editing in response to gut microbiome in honeybees
- Yuange Duan,
- Min Huang,
- Lin Ye,
- Ling Ma,
- Yashuai Wu,
- Yating Du,
- Jiyao Liu,
- Fan Song,
- Li Tian,
- Wanzhi Cai,
- Hu Li,
- Xin Zhou,
- and Shiqi Luo
Genome Res. March 4, 2026 ; Published in Advance March 4, 2026, doi:10.1101/gr.280291.124
...), recoding is overrepresented in twomajor clades, coleoids (Cephalopoda) (Alon et al. 2015; Liscovitch-Brauer et al. 2017) and Drosophila (Insecta) (Yu et al. 2016; Yablonovitch et al. 2017a; Duan et al. 2024a). The temporospatial regulation of RNA editing circumvents the pleiotropic effects caused by DNA...
Select this article
Research: Genome-wide nucleosome and transcription factor responses to genetic perturbations reveal chromatin-mediated mechanisms of transcriptional regulation
- Kevin Moyung,
- Yulong Li,
- Heather K. MacAlpine,
- Alexander J. Hartemink,
- and David M. MacAlpine
Genome Res. January 2026 36: 115-128; Published in Advance December 9, 2025, doi:10.1101/gr.279637.124
...previous studies characterizing transcriptomic (Hu et al. 2007; Kemmeren et al. 2014), metabolomic (Shakoury-Elizeh et al. 2010; Mülleder et al. 2016; Zelezniak et al. 2018), and proteomic (Messner et al. 2023) responses to genetic perturbations, the exact chromatin-mediated mechanisms enacting...
Select this article
Method: Analysis of coding gene expression from small RNA sequencing
- Aygun Azadova,
- Anthonia Ekperuoh,
- Greg N. Brooke,
- and Antonio Marco
Genome Res. March 2026 36: 611-618; Published in Advance February 10, 2026, doi:10.1101/gr.281364.125
...46: D296–D302. doi:10.1093/nar/gkx1067 ↵Elizarraras JM, Liao Y, Shi Z, Zhu Q, Pico AR, Zhang B. 2024. WebGestalt 2024: faster gene set analysis and new support for metabolomics and multi-omics. Nucleic Acids Res 52: W415–W421. doi:10.1093/nar/gkae456 ↵Enright A, John B, Gaul U, Tuschl T, Sander C...
Select this article
Method: A metabolomic and systems biology perspective on the brain of the Fragile X syndrome mouse model
- Laetitia Davidovic,
- Vincent Navratil,
- Carmela M. Bonaccorso,
- Maria Vincenza Catania,
- Barbara Bardoni,
- and Marc-Emmanuel Dumas
Genome Res. December 2011 21: 2190-2202; Published in Advance September 7, 2011, doi:10.1101/gr.116764.110
...A metabolomic and systems biology perspective on the brain of the Fragile X syndrome mouse model Laetitia Davidovic 1 , 2 , 8 , Vincent Navratil 3 , 4 , Carmela M. Bonaccorso 5 , Maria Vincenza Catania 5 , 6 , Barbara Bardoni 1 , 2...
Select this article
COMMENTARY: Systems Biology Is Taking Off
- Måns Ehrenberg,
- Johan Elf,
- Erik Aurell,
- Rickard Sandberg,
- and Jesper Tegnér
Genome Res. November 2003 13: 2377-2380; doi:10.1101/gr.1763203
...of systems biology, whereas others prefer not to put a label on what is happening. Modern molecular biology was born with the discovery that genetics is based on nucleic acid chemistry ( Watson and Crick 1953 ), and one way to define it is to say that molecular biology is a large box of tools to do genetics...
Select this article
Research: Genome-wide relaxation of selection and the evolution of the island syndrome in Orkney voles
- Xuejing Wang and
- Gerald Heckel
Genome Res. June 2024 34: 851-862; Published in Advance July 2, 2024, doi:10.1101/gr.278487.123
...the accuracy of the detection of positive selection (Grossman et al. 2010).In this study, we investigated the genomic interplay between selection and genetic drift leading to the island syndrome in a system with an exceptionally long and clear history of population isolation. Common voles (Microtus arvalis...
Select this article
Method: Spatial Cellular Networks from omics data with SpaCeNet
- Stefan Schrod,
- Niklas Lück,
- Robert Lohmayer,
- Stefan Solbrig,
- Dennis Völkl,
- Tina Wipfler,
- Katherine H. Shutta,
- Marouen Ben Guebila,
- Andreas Schäfer,
- Tim Beißbarth,
- Helena U. Zacharias,
- Peter J. Oefner,
- John Quackenbush,
- and Michael Altenbuchinger
Genome Res. September 2024 34: 1371-1383; Published in Advance September 4, 2024, doi:10.1101/gr.279125.124
...SpaCeNet in extensive simulation studies and illustrate its capacity to augment exploratory data analysis of spatial transcriptomics data from the mouse visual cortex, mouse organogenesis, and the Drosophila blastoderm.ResultsSpaCeNet infers cell–cell interactions from spatial omics data...

For checked items

view abstracts
download to citation manager

Searching journal content for articles similar to Zhou et al. 30 (3): 392.

Search Results

Modify Results

This search

Preprint Server

Current Issue

In This Issue

Citation format:
Results / page:
Results order: