Searching journal content for articles similar to Zhou et al. 30 (11): 1667.

Displaying results 1-2 of 2

For checked items

view abstracts
download to citation manager

Select this article
Method: Accurate and fast graph-based pangenome annotation and clustering with ggCaller
- Samuel T. Horsfield,
- Gerry Tonkin-Hill,
- Nicholas J. Croucher,
- and John A. Lees
Genome Res. September 2023 33: 1622-1637; Published in Advance August 24, 2023, doi:10.1101/gr.277733.123
...simulated s using ART to generate error-prone reads, and SPAdes to assemble these (Bankevich et al. 2012; Huang et al. 2012). ggCaller was compared against three workflows: genes were first identified and annotated by Prokka, and pan analysis was conducted either using either Roary, Panaroo, or PEPPAN (each...
OPEN ACCESS ARTICLE
Select this article
Method: Robust analysis of prokaryotic pangenome gene gain and loss rates with Panstripe
- Gerry Tonkin-Hill,
- Rebecca A. Gladstone,
- Anna K. Pöntinen,
- Sergio Arredondo-Alonso,
- Stephen D. Bentley,
- and Jukka Corander
Genome Res. January 2023 33: 129-140; Published in Advance January 20, 2023, doi:10.1101/gr.277340.122
...is to group homologous gene sequences into orthologous and paralogous gene clusters. The union of these clusters within a particular species or group is commonly referred to as the pan (Medini et al. 2005). Genes are often further classified into either the “core” , which is found in almost all members...
OPEN ACCESS ARTICLE

For checked items

view abstracts
download to citation manager

Modify Results

Citation format:
Results / page:
Results order:

Preprint Server

Current Issue

March 2026, 36 (3)