Searching journal content for articles similar to Zhou et al. 30 (1): 138.

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  1. Method: Accurate reconstruction of bacterial pan- and core genomes with PEPPAN
    • Zhemin Zhou,
    • Jane Charlesworth,
    • and Mark Achtman
    Genome Res. November 2020 30: 1667-1679; Published in Advance October 14, 2020, doi:10.1101/gr.260828.120
    ...diversity of bacterial genomic changes, including gene duplications and HGTs (leading to paralogs), homologous recombination, and large-scale gene insertions and deletions. We therefore performed our first benchmarks by comparing a pan calculated from 15 manually curated Salmonella enterica annotations...
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  2. Research: Accurate genotyping of three major respiratory bacterial pathogens with ONT R10.4.1 long-read sequencing
    • Nora Zidane,
    • Carla Rodrigues,
    • Valérie Bouchez,
    • Martin Rethoret-Pasty,
    • Virginie Passet,
    • Sylvain Brisse,
    • and Chiara Crestani
    Genome Res. August 2025 35: 1758-1766; Published in Advance June 2, 2025, doi:10.1101/gr.279829.124
    ..., Achtman M. 2020. The EnteroBase user's guide, with case studies on Salmonella transmissions, Yersinia pestis phylogeny, and Escherichia core genomic diversity. Genome Res 30: 138–152. doi:10.1101/gr.251678.119 Nora Zidane 1 , Carla Rodrigues 1 , 2 , Valérie Bouchez 1 , 2 , Martin Rethoret-Pasty 1...
  3. Method: Extremely fast construction and querying of compacted and colored de Bruijn graphs with GGCAT
    • Andrea Cracco and
    • Alexandru I. Tomescu
    Genome Res. July 2023 33: 1198-1207; Published in Advance May 30, 2023, doi:10.1101/gr.277615.122
    ...accession number PRJEB33098 (Mas-Lloret et al. 2020). The 309 K Salmonella sequences were downloaded by us in February 2022 from the EnteroBase database (Zhou et al. 2020) and gzipped. The 100 Human s are from the set of 2505 Human s generated by Schmidt et al. (2023) using GRCh37 and the variant files from...
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