Searching journal content for articles similar to Zhidkov et al. 19 (4): 576.

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  1. Research: Vertebrates show coordinated elevated expression of mitochondrial and nuclear genes after birth
    • Hadar Medini and
    • Dan Mishmar
    Genome Res. March 2025 35: 459-474; Published in Advance March 4, 2025, doi:10.1101/gr.279700.124
    ...are indicated in orange and dark blue, respectively. Additional selected metabolic pathways are indicated, including the mitochondrial ribosome (mito-ribosome), tricarboxylic acid cycle (TCA), and glycolysis. The lack of knowledge of regulators of mitonuclear gene expression is indicated.ResultsPostnatal mtDNA...
  2. Review: A systematic review on the biochemical threshold of mitochondrial genetic variants
    • Karan K. Smith,
    • Jesse D. Moreira,
    • Callum R. Wilson,
    • June O. Padera,
    • Ashlee N. Lamason,
    • Liying Xue,
    • Deepa M. Gopal,
    • David B. Flynn,
    • and Jessica L. Fetterman
    Genome Res. March 2024 34: 341-365; Published in Advance April 16, 2024, doi:10.1101/gr.278200.123
    ...Corresponding author: jefetter@bu.eduAbstractMitochondrial DNA (mtDNA) variants cause a range of diseases from severe pediatric syndromes to aging-related conditions. The percentage of mtDNA copies carrying a pathogenic variant, variant allele frequency (VAF), must reach a threshold before a biochemical defect...
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  3. RESOURCE: The Complete Sequence of the Zebrafish (Danio rerio) Mitochondrial Genome and Evolutionary Patterns in Vertebrate Mitochondrial DNA
    • Richard E. Broughton,
    • Jami E. Milam,
    • and Bruce A. Roe
    Genome Res. November 1, 2001 11: 1958-1967; Published in Advance October 15, 2001, doi:10.1101/gr.156801
    ...and 22 tRNAs ( Boore 1999 ). Mutations in mitochondrial DNA (mtDNA) have a number of known deleterious effects. At least 50 base substitutions and hundreds of insertion/deletion mutations have been identified in human mtDNA ( MITOMAP 2000 ), with effects ranging from degenerative diseases ( Wallace 1999...
  4. Perspective: Recognition of the polycistronic nature of human genes is critical to understanding the genotype-phenotype relationship
    • Marie A. Brunet,
    • Sébastien A. Levesque,
    • Darel J. Hunting,
    • Alan A. Cohen,
    • and Xavier Roucou
    Genome Res. May 2018 28: 609-624; Published in Advance April 6, 2018, doi:10.1101/gr.230938.117
    ...2014). ORF prediction mostly relies on ORF size, codon usage, and the nonsynonymous to synonymous mutation ratio (Pruitt et al. 2009; Keller et al. 2011; Mudge and Harrow 2016). This means that current annotations are shaped by evolution-, prior knowledge-, and hypothesis-driven data. As proposed...
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  5. Method: Genome-wide nucleosome map and cytosine methylation levels of an ancient human genome
    • Jakob Skou Pedersen,
    • Eivind Valen,
    • Amhed M. Vargas Velazquez,
    • Brian J. Parker,
    • Morten Rasmussen,
    • Stinus Lindgreen,
    • Berit Lilje,
    • Desmond J. Tobin,
    • Theresa K. Kelly,
    • Søren Vang,
    • Robin Andersson,
    • Peter A. Jones,
    • Cindi A. Hoover,
    • Alexei Tikhonov,
    • Egor Prokhortchouk,
    • Edward M. Rubin,
    • Albin Sandelin,
    • M. Thomas P. Gilbert,
    • Anders Krogh,
    • Eske Willerslev,
    • and Ludovic Orlando
    Genome Res. March 2014 24: 454-466; Published in Advance December 3, 2013, doi:10.1101/gr.163592.113
    ...from these samples has largely been limited to nucleotide polymorphisms. Unlike mutations, epigenetic modifications do not alter the underlying DNA sequence, but can be inherited across cell divisions and from parents to offspring and can control gene expression by reshaping cytosine methylation...
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  6. PERSPECTIVE: The canine genome
    • Elaine A. Ostrander and
    • Robert K. Wayne
    Genome Res. December 2005 15: 1706-1716; doi:10.1101/gr.3736605
    ...gene per generation ( Hartl and Clark 1997 ). Mitochondrial DNA (mtDNA) sequence analysis has shed some light on the location of dog domestication as well as the number of founding matralines. MtDNA analysis offers a unique perspective on evolutionary history because the mitochondrial is maternally...
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