Searching journal content for articles similar to Zhao et al. 25 (1): 66.

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  1. Research: Profiling neural editomes reveals a molecular mechanism to regulate RNA editing during development
    • Suba Rajendren,
    • Alfa Dhakal,
    • Pranathi Vadlamani,
    • Jack Townsend,
    • Sarah N. Deffit,
    • and Heather A. Hundley
    Genome Res. January 2021 31: 27-39; Published in Advance December 18, 2020, doi:10.1101/gr.267575.120
    ...is development-specificA major regulator of RNA editing in C. elegans is the deaminase-deficient ADAR protein, ADR-1 (Washburn et al. 2014; Rajendren et al. 2018). Initial studies of adr-1(-) worms identified both sites that show increased and decreased editing compared with wild-type worms (Tonkin et al. 2002...
  2. Research: Genome-wide A-to-I RNA editing in fungi independent of ADAR enzymes
    • Huiquan Liu,
    • Qinhu Wang,
    • Yi He,
    • Lingfeng Chen,
    • Chaofeng Hao,
    • Cong Jiang,
    • Yang Li,
    • Yafeng Dai,
    • Zhensheng Kang,
    • and Jin-Rong Xu
    Genome Res. April 2016 26: 499-509; Published in Advance March 2, 2016, doi:10.1101/gr.199877.115
    ...Genome-wide A-to-I RNA editing in fungi independent of ADAR enzymes Huiquan Liu 1 , Qinhu Wang 1 , Yi He 2 , Lingfeng Chen 1 , Chaofeng Hao 1 , Cong Jiang 1 , Yang Li 3 , Yafeng Dai 1 , Zhensheng Kang 1...
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  3. Resource: Direct full-length RNA sequencing reveals unexpected transcriptome complexity during Caenorhabditis elegans development
    • Runsheng Li,
    • Xiaoliang Ren,
    • Qiutao Ding,
    • Yu Bi,
    • Dongying Xie,
    • and Zhongying Zhao
    Genome Res. February 2020 30: 287-298; Published in Advance February 5, 2020, doi:10.1101/gr.251512.119
    ...may provide important insights into developmental processes. Finally, it holds promise to define RNA modifications de novo without an extra treatment step, for example, by measuring the deviation in the ion current profile from that of wild-type RNA. Here, we performed direct RNA sequencing of C...
  4. Resource: The full-length transcriptome of C. elegans using direct RNA sequencing
    • Nathan P. Roach,
    • Norah Sadowski,
    • Amelia F. Alessi,
    • Winston Timp,
    • James Taylor,
    • and John K. Kim
    Genome Res. February 2020 30: 299-312; Published in Advance February 5, 2020, doi:10.1101/gr.251314.119
    ...further increase the number of genes and isoforms identified, bringing this data set closer to capturing the theoretical complete C. elegans transcriptome.The ability to estimate poly(A) tail lengths for each read is another advantage of dRNA-seq. Supporting the validity of our poly(A) profiling approach...
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  5. Resource: The C. elegans embryonic transcriptome with tissue, time, and alternative splicing resolution
    • Adam D. Warner,
    • Louis Gevirtzman,
    • LaDeana W. Hillier,
    • Brent Ewing,
    • and Robert H. Waterston
    Genome Res. June 2019 29: 1036-1045; Published in Advance May 23, 2019, doi:10.1101/gr.243394.118
    ....08.003 ↵Hashimshony T, Feder M, Levin M, Hall BK, Yanai I. 2015. Spatiotemporal transcriptomics reveals the evolutionary history of the endoderm germ layer. Nature 519: 219–222. doi:10.1038/nature13996 ↵Hundley HA, Bass BL. 2010. ADAR editing in double-stranded UTRs and other noncoding RNA sequences. Trends Biochem...
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  6. Research: A-to-I RNA editing promotes developmental stage–specific gene and lncRNA expression
    • Boaz Goldstein,
    • Lily Agranat-Tamir,
    • Dean Light,
    • Orna Ben-Naim Zgayer,
    • Alla Fishman,
    • and Ayelet T. Lamm
    Genome Res. March 2017 27: 462-470; Published in Advance December 28, 2016, doi:10.1101/gr.211169.116
    ...in gene expression upon knockout of the A-to-I RNA editing genes. We generated RNA-seq libraries from wild-type and ADAR mutant worms grown in the same conditions. We collected the worms at the same developmental stage and compared the expression level of genes at embryo stage and L4 larval developmental...
  7. Research: A high resolution A-to-I editing map in the mouse identifies editing events controlled by pre-mRNA splicing
    • Konstantin Licht,
    • Utkarsh Kapoor,
    • Fabian Amman,
    • Ernesto Picardi,
    • David Martin,
    • Prajakta Bajad,
    • and Michael F. Jantsch
    Genome Res. September 2019 29: 1453-1463; Published in Advance August 19, 2019, doi:10.1101/gr.242636.118
    ...authors: Michael.Jantsch@meduniwien.ac.at, Konstantin.Licht@meduniwien.ac.atAbstractPre-mRNA-splicing and adenosine to inosine (A-to-I) RNA-editing occur mostly cotranscriptionally. During A-to-I editing, a genomically encoded adenosine is deaminated to inosine by adenosine deaminases acting on RNA (ADARs...
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