Searching journal content for articles similar to Zhang et al. 16 (6): 757.

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  1. LETTER: Selection-driven transcriptome polymorphism in Escherichia coli/Shigella species
    • Tony Le Gall,
    • Pierre Darlu,
    • Patricia Escobar-Páramo,
    • Bertrand Picard,
    • and Erick Denamur
    Genome Res. February 2005 15: 260-268; doi:10.1101/gr.2405905
    ...in Shigella spp. Appl. Environ. Microbiol. 57 : 2912 -2917. ↵ Jin, Q., Yuan, Z., Xu, J., Wang, Y., Shen, Y., Lu, W., Wang, J., Liu, H., Yang, J., Yang, F., et al. 2002 . Genome sequence of Shigella flexneri 2a: Insights into pathogenicity through comparison with s of Escherichia coli K12 and O157. Nucleic...
  2. LETTER: Simple Sequence Repeats in Escherichia coli: Abundance, Distribution, Composition, and Polymorphism
    • Riva Gur-Arie,
    • Cyril J. Cohen,
    • Yuval Eitan,
    • Leora Shelef,
    • Eric M. Hallerman,
    • and Yechezkel Kashi
    Genome Res. January 1, 2000 10: 62-71; doi:10.1101/gr.10.1.62
    ..., Blacksburg, Virginia 24061 USA Abstract Computer-based genome-wide screening of the DNA sequence of Escherichia coli strain K12 revealed tens of thousands of tandem simple sequence repeat (SSR) tracts, with motifs ranging from 1 to 6 nucleotides. SSRs were well distributed throughout the genome...
  3. METHODS: Genomic Signature Tags (GSTs): A System for Profiling Genomic DNA
    • John J. Dunn,
    • Sean R. McCorkle,
    • Laura A. Praissman,
    • Geoffrey Hind,
    • Daniel van der Lelie,
    • Wadie F. Bahou,
    • Dmitri V. Gnatenko,
    • and Maureen K. Krause
    Genome Res. November 1, 2002 12: 1756-1765; doi:10.1101/gr.306102
    ...and ligated into a pZero-based positive selection vector. The recombinant plasmids are electroporated into competent Escherichia coli cells to generate the GST library in preparation for DNA sequence analysis. View larger version: In this window In a new window Figure 1. Schematic for GST preparation...
  4. LETTER: Millions of Years of Evolution Preserved: A Comprehensive Catalog of the Processed Pseudogenes in the Human Genome
    • Zhaolei Zhang,
    • Paul M. Harrison,
    • Yin Liu,
    • and Mark Gerstein
    Genome Res. December 2003 13: 2541-2558; doi:10.1101/gr.1429003
    ...and evolution of s as the rate of nucleotide substitutions ( Graur et al. 1989 ; Zhang and Gerstein 2003c ) and the rate of DNA loss can be deduced from the study of these genomic “fossil records” ( Petrov et al. 1996 ; Petrov and Hartl 2000 ; Bensasson et al. 2001 ). Analysis of the multiple cytochrome c...
  5. Method: Whole-genome sequences of Chlamydia trachomatis directly from clinical samples without culture
    • Helena M.B. Seth-Smith,
    • Simon R. Harris,
    • Rachel J. Skilton,
    • Frans M. Radebe,
    • Daniel Golparian,
    • Elena Shipitsyna,
    • Pham Thanh Duy,
    • Paul Scott,
    • Lesley T. Cutcliffe,
    • Colette O’Neill,
    • Surendra Parmar,
    • Rachel Pitt,
    • Stephen Baker,
    • Catherine A. Ison,
    • Peter Marsh,
    • Hamid Jalal,
    • David A. Lewis,
    • Magnus Unemo,
    • Ian N. Clarke,
    • Julian Parkhill,
    • and Nicholas R. Thomson
    Genome Res. May 2013 23: 855-866; Published in Advance March 22, 2013, doi:10.1101/gr.150037.112
    ...and remove PCR inhibitors in previous studies on genera including Listeria (Skjerve et al. 1990), Mycobacterium (Grant et al. 1998), Escherichia coli O157:H7 (Fratamico et al. 1992), Actinobacillus (Angen et al. 2001), and also Chlamydia (Niesters et al. 1991; Hedrum et al. 1992). Using this combined...
  6. LETTER: Comparative Analysis of Superintegrons: Engineering Extensive Genetic Diversity in the Vibrionaceae
    • Dean A. Rowe-Magnus,
    • Anne-Marie Guerout,
    • Latefa Biskri,
    • Philippe Bouige,
    • and Didier Mazel
    Genome Res. March 1, 2003 13: 428-442; doi:10.1101/gr.617103
    ...of Escherichia coli O157:H7 (accession no. NP_285744; Perna et al. 2001 ), whereas CcdBVfi shared only 35% identity with the toxin, CcdBO157 (accession no. NP_2857445.1). To functionally characterize this putative ccdAB system, the 739-bp Nsi I fragment from p669 encompassing the two ORFs of V. fischeri cassette...
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