Searching journal content for articles similar to Zhang and Gaut 13 (12): 2533.

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  1. Letter: Do genetic recombination and gene density shape the pattern of DNA elimination in rice long terminal repeat retrotransposons?
    • Zhixi Tian,
    • Carene Rizzon,
    • Jianchang Du,
    • Liucun Zhu,
    • Jeffrey L. Bennetzen,
    • Scott A. Jackson,
    • Brandon S. Gaut,
    • and Jianxin Ma
    Genome Res. December 2009 19: 2221-2230; Published in Advance September 29, 2009, doi:10.1101/gr.083899.108
    ...Brandon S, Gaut Jeffrey L, Bennetzen Jackson, S.A ScottA Jackson Zhixi Tian Zhixi genome;gr.083899.108 10.1101/gr.083899.108 1088-9051 Do genetic recombination and gene density shape the pattern of DNA elimination in rice long terminal repeat retrotransposons? Letter Do genetic recombination and gene...
  2. LETTER: Evolution of Arabidopsis microRNA families through duplication events
    • Christopher Maher,
    • Lincoln Stein,
    • and Doreen Ware
    Genome Res. April 2006 16: 510-519; Published in Advance March 6, 2006, doi:10.1101/gr.4680506
    ...evolving families in Arabidopsis thaliana, and found that they arose from a process of genome-wide duplication, tandem duplication, and segmental duplication followed by dispersal and diversification, similar to the processes that drive the evolution of protein gene families. Using multiple expression...
  3. Research: Atypical epigenetic and small RNA control of degenerated transposons and their fragments in clonally reproducing Spirodela polyrhiza
    • Rodolphe Dombey,
    • Daniel Buendía-Ávila,
    • Verónica Barragán-Borrero,
    • Laura Diezma-Navas,
    • Arturo Ponce-Mañe,
    • José Mario Vargas-Guerrero,
    • Rana Elias,
    • and Arturo Marí-Ordóñez
    Genome Res. March 2025 35: 522-544; Published in Advance March 4, 2025, doi:10.1101/gr.279532.124
    ...2014; Zervudacki et al. 2018; Sammarco et al. 2022; Ilık et al. 2024). Therefore, maintaining epigenetic control is important even for degenerated TEs, and in consequence, TE abundance and location largely shape the epigenetic landscape of s (Houben et al. 2003; Seymour et al. 2014; Sigman and Slotkin...
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  4. Research: Rates and spectra of de novo structural mutations in Chlamydomonas reinhardtii
    • Eugenio López-Cortegano,
    • Rory J. Craig,
    • Jobran Chebib,
    • Eniolaye J. Balogun,
    • and Peter D. Keightley
    Genome Res. January 2023 33: 45-60; Published in Advance December 12, 2022, doi:10.1101/gr.276957.122
    ..., duplications provide the raw material for gene family evolution via processes that include neo- and subfunctionalization (Kuzmin et al. 2022). Inversions may result in recombination suppression, and the subsequent evolutionary divergence of ancestral and inverted haplotypes has been implicated in local...
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  5. Research: Telomerase-independent survival leads to a mosaic of complex subtelomere rearrangements in Chlamydomonas reinhardtii
    • Frédéric Chaux,
    • Nicolas Agier,
    • Clotilde Garrido,
    • Gilles Fischer,
    • Stephan Eberhard,
    • and Zhou Xu
    Genome Res. September 2023 33: 1582-1598; Published in Advance August 14, 2023, doi:10.1101/gr.278043.123
    ...instabilities that stem from telomeres and take many shapes: point mutations, deletions/insertions, translocations, aneuploidy, duplications, and even more dramatic rearrangements, such as chromothripsis during telomere crisis (Maciejowski et al. 2015). The precise molecular mechanisms underlying...
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  6. Review: Advancing genomic technologies and clinical awareness accelerates discovery of disease-associated tandem repeat sequences
    • Terence Gall-Duncan,
    • Nozomu Sato,
    • Ryan K.C. Yuen,
    • and Christopher E. Pearson
    Genome Res. January 2022 32: 1-27; Published in Advance December 29, 2021, doi:10.1101/gr.269530.120
    ...cells (Trottier et al. 1995).The continuous discovery of new TR expansion mutations in the 1990s fully leveraged the power of the Human Genome Project, as the huge numbers of sequence-tagged site (STS) markers that became available enabled fine mapping of the disease loci. Today, locus mapping can...
  7. REVIEW: Clusters of Resistance Genes in Plants Evolve by Divergent Selection and a Birth-and-Death Process
    • Richard W. Michelmore and
    • Blake C. Meyers
    Genome Res. November 1, 1998 8: 1113-1130; doi:10.1101/gr.8.11.1113
    ...-cell receptor (TCR), and immunoglobulin genes. Therefore, although the specific types of genes involved are different, the evolutionary forces shaping the plant and vertebrate defense systems may be similar. We propose a model for the evolution of plant R genes that is adapted and expanded from a model...
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