Searching journal content for articles similar to Zhan et al. 17 (8): 1236.

Displaying results 1-10 of 82

For checked items

view abstracts
download to citation manager

Select this article
Research: Rapid evolution of piRNA clusters in the Drosophila melanogaster ovary
- Satyam P. Srivastav,
- Cédric Feschotte,
- and Andrew G. Clark
Genome Res. May 2024 34: 711-724; Published in Advance May 15, 2024, doi:10.1101/gr.278062.123
...as spatial and temporal activity (Pasquesi et al. 2020; Lawlor et al. 2021; Chang et al. 2022). Hence, it is likely that piCs evolve through diverse mechanisms to repress newly introduced TEs.The organization of piCs is best characterized in Drosophila melanogaster. The -wide piC landscape in the D...
Select this article
Resource: Binding profiles for 961 Drosophila and C. elegans transcription factors reveal tissue-specific regulatory relationships
- Michelle Kudron,
- Louis Gevirtzman,
- Alec Victorsen,
- Bridget C. Lear,
- Jiahao Gao,
- Jinrui Xu,
- Swapna Samanta,
- Emily Frink,
- Adri Tran-Pearson,
- Chau Huynh,
- Dionne Vafeados,
- Ann Hammonds,
- William Fisher,
- Martha Wall,
- Greg Wesseling,
- Vanessa Hernandez,
- Zhichun Lin,
- Mary Kasparian,
- Kevin White,
- Ravi Allada,
- Mark Gerstein,
- LaDeana Hillier,
- Susan E. Celniker,
- Valerie Reinke,
- and Robert H. Waterston
Genome Res. December 2024 34: 2319-2334; Published in Advance October 22, 2024, doi:10.1101/gr.279037.124
...organism Encyclopedia of Regulatory Networks) consortia to systematically assay TF binding events in vivo in two major model organisms, Drosophila melanogaster (fly) and Caenorhabditis elegans (worm). These data sets comprise 605 TFs identifying 3.6 M sites in the fly and 356 TFs identifying 0.9 M sites...
Select this article
Research: Transcriptional programs mediating neuronal toxicity and altered glial–neuronal signaling in a Drosophila knock-in tauopathy model
- Hassan Bukhari,
- Vanitha Nithianandam,
- Rachel A. Battaglia,
- Anthony Cicalo,
- Souvarish Sarkar,
- Aram Comjean,
- Yanhui Hu,
- Matthew J. Leventhal,
- Xianjun Dong,
- and Mel B. Feany
Genome Res. April 2024 34: 590-605; Published in Advance April 10, 2024, doi:10.1101/gr.278576.123
...Transcriptional programs mediating neuronal toxicity and altered glial–neuronal signaling in a Drosophila knock-in tauopathy model Hassan Bukhari1,2, Vanitha Nithianandam1,2, Rachel A. Battaglia1,2, Anthony Cicalo2,3,4, Souvarish Sarkar1, Aram Comjean5, Yanhui Hu5, Matthew J. Leventhal6,7, Xianjun...
OPEN ACCESS ARTICLE
Select this article
Research: Population genomics reveals mechanisms and dynamics of de novo expressed open reading frame emergence in Drosophila melanogaster
- Anna Grandchamp,
- Lucas Kühl,
- Marie Lebherz,
- Kathrin Brüggemann,
- John Parsch,
- and Erich Bornberg-Bauer
Genome Res. June 2023 33: 872-890; Published in Advance July 13, 2023, doi:10.1101/gr.277482.122
...and that (few) surviving transcripts gain stable and broader expressions, presumably via fast epigenetic control (Schmitz et al. 2020). Zhao et al. (2014) identified 106 de novo genes specifically expressed in the testis of laboratory strains of Drosophila melanogaster. Furthermore, Moyers and Zhang (2016...
Select this article
Research: Single-cell analysis reveals transcriptional dynamics in healthy primary parathyroid tissue
- Aarthi Venkat,
- Maximillian J. Carlino,
- Betty R. Lawton,
- Manju L. Prasad,
- Matthew Amodio,
- Courtney E. Gibson,
- Caroline J. Zeiss,
- Scott E. Youlten,
- Smita Krishnaswamy,
- and Diane S. Krause
Genome Res. June 2024 34: 837-850; Published in Advance July 8, 2024, doi:10.1101/gr.278215.123
...target genes as identified by the ENCODE data set ENCSR407MOM, including HERC4, RIF1, TEAD1, and STAT5B (Subramanian et al. 2005; Sloan et al. 2016; Kolmykov et al. 2021). Although derived from Drosophila cells, this ChIP-seq data set has 2444 candidate target genes with human or primate orthologs...
Select this article
Resource: The developmental proteome of Drosophila melanogaster
- Nuria Casas-Vila,
- Alina Bluhm,
- Sergi Sayols,
- Nadja Dinges,
- Mario Dejung,
- Tina Altenhein,
- Dennis Kappei,
- Benjamin Altenhein,
- Jean-Yves Roignant,
- and Falk Butter
Genome Res. July 2017 27: 1273-1285; Published in Advance April 5, 2017, doi:10.1101/gr.213694.116
...provide a powerful resource and can be explored in detail in our interactive web interface. [Supplemental material is available for this article.] Drosophila melanogaster is among the best-described model organisms for development and aging. During its life cycle, it progresses through well-defined stages...
Select this article
Resource: An 11-point time course midgut transcriptome across 72 h after bloodfeeding provides detailed temporal resolution of transcript expression in the arbovirus vector, Aedes aegypti
- Hitoshi Tsujimoto and
- Zach N. Adelman
Genome Res. September 2023 33: 1638-1648; Published in Advance October 6, 2023, doi:10.1101/gr.277808.123
...exposure and to a bloodmeal in the midgut suggests potential roles in blood digestion/detoxification that remain to be determined.Recently, a heme exporter has been characterized from Drosophila melanogaster (Wang et al. 2022). The same study verified that homologs in A. aegypti also had similar activity...
Select this article
Research: Chromatin conformation and transcriptional activity are permissive regulators of DNA replication initiation in Drosophila
- Robin L. Armstrong,
- Taylor J.R. Penke,
- Brian D. Strahl,
- A. Gregory Matera,
- Daniel J. McKay,
- David M. MacAlpine,
- and Robert J. Duronio
Genome Res. November 2018 28: 1688-1700; Published in Advance October 2, 2018, doi:10.1101/gr.239913.118
...that transcriptional repression may contribute to late replication. We also explored relationships among chromatin, transcription, and replication in euchromatin by analyzing H4K16R mutants. In Drosophila, the X Chromosome gene expression is up-regulated twofold and replicates earlier in XY males than it does in XX...
Select this article
Research: Extensive cross-regulation of post-transcriptional regulatory networks in Drosophila
- Marcus H. Stoiber,
- Sara Olson,
- Gemma E. May,
- Michael O. Duff,
- Jan Manent,
- Robert Obar,
- K.G. Guruharsha,
- Peter J. Bickel,
- Spyros Artavanis-Tsakonas,
- James B. Brown,
- Brenton R. Graveley,
- and Susan E. Celniker
Genome Res. November 2015 25: 1692-1702; Published in Advance August 20, 2015, doi:10.1101/gr.182675.114
...the importance of these complexes in many biological processes, including splicing, polyadenylation, stability, transportation, localization, and translation, their compositions are largely unknown. We affinity-purified 20 distinct RNA-binding proteins (RBPs) from cultured Drosophila melanogaster cells under...
OPEN ACCESS ARTICLE
Select this article
Research: Spatial organization of chromosomes leads to heterogeneous chromatin motion and drives the liquid- or gel-like dynamical behavior of chromatin
- Hossein Salari,
- Marco Di Stefano,
- and Daniel Jost
Genome Res. January 2022 32: 28-43; Published in Advance December 28, 2021, doi:10.1101/gr.275827.121
...represent 0.25 μm of real space.Next, we optimized the parameters (Methods) of the model for two regions of interest (Table 1): a 23-Mbp-long portion of Chromosome 1 (113–136 Mbp) in mouse embryonic stem cells (mESC) (Fig. 2B) and the Chromosome arm 2L in Drosophila melanogaster Kc167 female embryonic cells...

For checked items

view abstracts
download to citation manager

Searching journal content for articles similar to Zhan et al. 17 (8): 1236.

Search Results

Modify Results

This search

Preprint Server

Current Issue

In This Issue

Citation format:
Results / page:
Results order: