Searching journal content for articles similar to Zahin et al. 34 (9): 1365.

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  1. ...step in this process is the prediction of a consensus sequence derived from long reads, providing a highly accurate reconstruction of the original template (e.g., circular RNA). This step requires in silico intervention and typically employs widely used tandem repeat detection tools for consensus...
  2. ...Accurate short-read alignment through r-index-based pan indexing Rahul Varki1,4, Massimiliano Rossi1,4, Eddie Ferro1, Marco Oliva1, Erik Garrison2, Ben Langmead3 and Christina Boucher1 1Department of Computer and Information Science and Engineering, University of Florida, Gainesville, Florida 32611...
  3. ...-splicing junctions. Third, psirc quantifies linear and circular transcript isoforms together, allowing it to accurately determine the relative expression levels of the linear and circular isoforms.We have found that for some differentially expressed circRNA isoforms between NPC and NP, their expression levels were...
  4. ...The first affiliated hospital of Xi'an Jiaotong University, Xi'an Jiaotong University, Xi'an, Shaanxi, 710049, China; Corresponding authors: awcarroll@google.com, bpaten@ucsc.edu, shafin@google.comAbstractAccurate assemblies are essential for biological research, but even the highest...
  5. ...are essential for detecting TFs below 3%. NanoRCS provides an opportunity for cost-effective and rapid sample processing, which aligns well with clinical needs, particularly in settings where quick and accurate cancer monitoring is essential for personalized treatment strategies.A recent advancement in cancer...
  6. .... To this end, we present a cross–data set cell type annotation methodology with a universal reference data and method selection strategy (CAMUS) to achieve highly accurate and efficient annotations. We demonstrate the advantages of CAMUS by conducting comprehensive analyses on 672 pairs of cross-species scRNA...
  7. ...in diverse adult and pediatric cancers. Accurate detection of fusion transcripts is essential in cancer clinical diagnostics and prognostics and for guiding therapeutic development. Most currently available methods for fusion transcript detection are compatible with Illumina RNA-seq involving highly accurate...
  8. ...diagnostics and public health surveillance owing to their high throughput and low error rates (Fox et al. 2014; Pfeiffer et al. 2018). This has provided scientists worldwide with high-resolution data for bacterial strain subtyping, which is indispensable for accurate and reliable public health surveillance...
  9. ...leads to robust and accurate demultiplexing statistics, it is computationally expensive, limited to four barcodes, and does not support newer RNA004 kit chemistries.We hypothesized that training a DNA basecaller that could directly basecall a DNA barcode sequence present in the RTA, which is ligated...
  10. ...structures, hierarchical TADs play important roles in epigenetic organization, transcriptional activity, gene regulation, and cell differentiation. Currently, it remains a highly challenging task to accurately identify hierarchical TADs in a computational manner. The key bottleneck for existing TAD callers...
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