Searching journal content for articles similar to Yuan et al. 12 (9): 1345.

Displaying results 1-10 of 6190

For checked items

view abstracts
download to citation manager

Select this article
Research: Long-read genome assembly of the insect model organism Tribolium castaneum reveals spread of satellite DNA in gene-rich regions by recurrent burst events
- Marin Volarić,
- Evelin Despot-Slade,
- Damira Veseljak,
- Brankica Mravinac,
- and Nevenka Meštrović
Genome Res. November 2024 34: 1878-1894; Published in Advance October 22, 2024, doi:10.1101/gr.279225.124
...result in array loss, and therefore, satDNAs mainly persist in heterochromatic regions (for review, see Lower et al. 2018). However, from our study, it appears that gene-rich euchromatin, in which recombination is expected to occur, may tolerate the accumulation of satDNA. Further, comparative analysis...
OPEN ACCESS ARTICLE
Select this article
Research: miRNA-like secondary structures in maize (Zea mays) genes and transposable elements correlate with small RNAs, methylation, and expression
- Galen T. Martin,
- Edwin Solares,
- Jeanelle Guadardo-Mendez,
- Aline Muyle,
- Alexandros Bousios,
- and Brandon S. Gaut
Genome Res. November 2023 33: 1932-1946; Published in Advance November 2, 2023, doi:10.1101/gr.277459.122
...of certain TEs (Sijen and Plasterk 2003; Slotkin et al. 2003; Bousios et al. 2016; Hung and Slotkin 2021). One such example is Mu-killer, a locus that generates smRNAs and thereby silences MuDR elements (a DNA transposon) in maize (Zea mays ssp. mays) (Slotkin et al. 2003). Mu-killer consists of a truncated...
OPEN ACCESS ARTICLE
Select this article
Review: The superpowers of imprinting control regions
- Bertille Montibus,
- Franck Court,
- and Philippe Arnaud
Genome Res. January 2026 36: 1-19; Published in Advance December 10, 2025, doi:10.1101/gr.281215.125
...). These regions are essential for regulating approximately 200 imprinted genes in mammals, which are expressed in a parent-of-origin-specific manner. ICRs are emerging as “Swiss-army knife” regulatory elements that, by integrating epigenetic signals and influencing the three-dimensional (3D) chromatin structure...
Select this article
Research: Epigenetic characterization of pseudogenes across human tissues
- Yunzhe Jiang,
- Beatrice Borsari,
- and Mark Gerstein
Genome Res. April 15, 2026 gr.280768.125; Published in Advance April 15, 2026, doi:10.1101/gr.280768.125
...to unprocessed pseudogenes), these features suggest that the transcription of processed pseudogenes may require regulatory mechanisms distinct from canonical promoter-associated epigenetic activation. INTRODUCTION Since the release of its first draft in 2001, considerable efforts have been devoted to improving...
- Abstract
- Full Text (PDF)
OPEN ACCESS ARTICLEACCEPTED MANUSCRIPT
Select this article
Research: Epigenetic and evolutionary features of ape subterminal heterochromatin
- DongAhn Yoo,
- Katherine M. Munson,
- and Evan E. Eichler
Genome Res. January 2026 36: 38-49; Published in Advance October 22, 2025, doi:10.1101/gr.280987.125
...insertions and lineage-specific duplicated genes. Our findings suggest independent evolution of subterminal caps converging on a common genetic and epigenetic structure that promoted ectopic exchange as well as the emergence of novel genes at transition regions between euchromatin and heterochromatin...
OPEN ACCESS ARTICLE
Select this article
Method: Complete genetic and epigenetic architecture of D4Z4 macrosatellites in FSHD, BAMS, and reference cohorts with D4Z4End2End
- Lucinda C. Xiao,
- Ayush Semwal,
- Brianna St John,
- Kathleen Zeglinski,
- Shian Su,
- James Lancaster,
- Shifeng Xue,
- Bruno Reversade,
- Matthew E. Ritchie,
- Frédérique Magdinier,
- Marnie E. Blewitt,
- and Quentin Gouil
Genome Res. April 2026 36: 827-848; Published in Advance March 23, 2026, doi:10.1101/gr.280907.125
...status of the D4Z4 region, the recent guideline updates (Giardina et al. 2024) have identified it as a promising option for future FSHD diagnostics. In this study, we set out to develop an all-in-one, long-read-based workflow for the genetic and epigenetic analysis of FSHD (D4Z4End2End), combining...
OPEN ACCESS ARTICLE
Select this article
Method: BINDER achieves accurate identification of hierarchical TADs by comprehensively characterizing consensus TAD boundaries
- Yangyang Liu,
- Bingqiang Liu,
- and Juntao Liu
Genome Res. May 2025 35: 1194-1208; Published in Advance March 17, 2025, doi:10.1101/gr.279647.124
...of BINDER in predicting hierarchical TADs in ultrasparse Hi-C data.BINDER reveals explicit epigenetic features near hierarchical TAD boundariesEpigenetic features near TAD boundaries are a critical part of 3D genomics. A recent study suggested that chromatin would be extruded by an engaged cohesin complex...
Select this article
Method: MCHelper automatically curates transposable element libraries across eukaryotic species
- Simon Orozco-Arias,
- Pío Sierra,
- Richard Durbin,
- and Josefa González
Genome Res. December 2024 34: 2256-2268; Published in Advance December 9, 2024, doi:10.1101/gr.278821.123
...on libraries generated by three de novo TE tools, RM2, EDTA and REPET, which differ in their output formats, and in six species, which differ in TE content and size: the fruit fly (Drosophila melanogaster), rice (Oryza sativa), the hooded crow (Corvus cornix), zebrafish (Danio rerio), maize (Zea mays...
OPEN ACCESS ARTICLE
Select this article
Resource: A map of enhancer regions in primary human neural progenitor cells using capture STARR-seq
- Sophia C. Gaynor-Gillett,
- Lijun Cheng,
- Manman Shi,
- Jason Liu,
- Gaoyuan Wang,
- Megan Spector,
- Qiuyu Guo,
- Le Qi,
- Mary Flaherty,
- Martha Wall,
- Ahyeon Hwang,
- Mengting Gu,
- Zhanlin Chen,
- Yuhang Chen,
- PsychENCODE Consortium,
- Jennifer R. Moran,
- Jing Zhang,
- Donghoon Lee,
- Mark Gerstein,
- Daniel Geschwind,
- and Kevin P. White
Genome Res. August 2025 35: 1887-1901; Published in Advance July 11, 2025, doi:10.1101/gr.279584.124
...), and the median region size was 448 bp (Panel 1) and 500 bp (Panel 2) (Table 1). These assembled libraries were transfected into a phNPC line derived from a female fetus of Mexican descent (Methods). The same line was used for both technical replicates for both panels. Initial quality control revealed that our...
Select this article
Research: MHC in newts illuminates the evolutionary dynamics of complex regions in giant genomes
- Wiesław Babik,
- Katarzyna Dudek,
- Gemma Palomar,
- Marzena Marszałek,
- Grzegorz Dubin,
- Maximina H. Yun,
- and Magdalena Migalska
Genome Res. February 2026 36: 303-317; Published in Advance January 12, 2026, doi:10.1101/gr.281127.125
...region may have far-reaching evolutionary consequences. Specifically, the physical proximity—or separation—of genes influences the frequency of recombination between them, thereby potentially promoting or constraining coevolution among polymorphic genes that function together in a common pathway...

For checked items

view abstracts
download to citation manager

Searching journal content for articles similar to Yuan et al. 12 (9): 1345.

Search Results

Modify Results

This search

Preprint Server

Current Issue

In This Issue

Citation format:
Results / page:
Results order: