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Resource: Subtelomeric CTCF and cohesin binding site organization using improved subtelomere assemblies and a novel annotation pipeline
- Nicholas Stong,
- Zhong Deng,
- Ravi Gupta,
- Sufen Hu,
- Shiela Paul,
- Amber K. Weiner,
- Evan E. Eichler,
- Tina Graves,
- Catrina C. Fronick,
- Laura Courtney,
- Richard K. Wilson,
- Paul M. Lieberman,
- Ramana V. Davuluri,
- and Harold Riethman
Genome Res. June 2014 24: 1039-1050; Published in Advance March 27, 2014, doi:10.1101/gr.166983.113
...sequence assemblies that were extended by filling telomere-adjacent gaps using clone-based resources. A bioinformatic pipeline incorporating multiread mapping for annotation of the updated assemblies using short-read data sets was developed and implemented. Annotation of subtelomeric sequence features...
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Research: Dynamic evolution of satellite DNAs drastically differentiates the genomes of Tribolium sibling species
- Damira Veseljak,
- Evelin Despot-Slade,
- Marin Volarić,
- Lucija Horvat,
- Tanja Vojvoda Zeljko,
- Nevenka Meštrović,
- and Brankica Mravinac
Genome Res. November 2025 35: 2445-2460; Published in Advance September 16, 2025, doi:10.1101/gr.280516.125
...to their abundance and unclear function, but the accumulation of studies on numerous species began to change their unfavorable reputation over time. Because they frequently form heterochromatin blocks in the (peri)centromeric regions of many organisms, their most recognized role is attributed to the organization...

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