Searching journal content for articles similar to Yeom et al. 31 (6): 1106.

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  1. Research: Systematic identification and characterization of exon–intron circRNAs
    • Yinchun Zhong,
    • Yan Yang,
    • Xiaolin Wang,
    • Bingbing Ren,
    • Xueren Wang,
    • Ge Shan,
    • and Liang Chen
    Genome Res. March 2024 34: 376-393; Published in Advance April 12, 2024, doi:10.1101/gr.278590.123
    ...with the functional role of LIRs in regulating mRNA translation and decay (Braunschweig et al. 2014; Mauger et al. 2016; Schmitz et al. 2017; Wong and Schmitz 2022).A -wide CRISPR-Cas9 screen for genes regulating CIRs identifies SRSF1The introns retained in CIR were unique, and we subsequently sought to identify...
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  2. Research: Genetic regulation of nascent RNA maturation revealed by direct RNA nanopore sequencing
    • Karine Choquet,
    • Louis-Philippe Chaumont,
    • Simon Bache,
    • Autum R. Baxter-Koenigs,
    • and L. Stirling Churchman
    Genome Res. April 2025 35: 712-724; Published in Advance February 14, 2025, doi:10.1101/gr.279203.124
    ...reasoned that focusing on genes with higher level of variation across LCLs would provide greater power to dissect the influence of genetic variants on the different steps of pre-mRNA maturation and the interrelation between them. HLA genes are the most polymorphic loci in humans (Voorter et al. 2016...
  3. Research: Transcriptome dynamics through alternative polyadenylation in developmental and environmental responses in plants revealed by deep sequencing
    • Yingjia Shen,
    • R.C. Venu,
    • Kan Nobuta,
    • Xiaohui Wu,
    • Varun Notibala,
    • Caghan Demirci,
    • Blake C. Meyers,
    • Guo-Liang Wang,
    • Guoli Ji,
    • and Qingshun Q. Li
    Genome Res. September 2011 21: 1478-1486; Published in Advance August 3, 2011, doi:10.1101/gr.114744.110
    ...genes that have conserved APA events between rice and Arabidopsis. [Supplemental material is available for this article.] Messenger RNA (mRNA) polyadenylation is an essential posttranscriptional processing step in eukaryotic gene expression. Immediately following transcription, pre-mRNAs are capped...
  4. Resource: Native RNA sequencing in fission yeast reveals frequent alternative splicing isoforms
    • José Carlos Montañés,
    • Marta Huertas,
    • Simone G. Moro,
    • William R. Blevins,
    • Mercè Carmona,
    • José Ayté,
    • Elena Hidalgo,
    • and M. Mar Albà
    Genome Res. June 2022 32: 1215-1227; Published in Advance May 26, 2022, doi:10.1101/gr.276516.121
    ...of which occur at frequencies >20%, indicating that functional alternative splicing in S. pombe is more prevalent than previously suspected. Intron retention events make ∼80% of the cases; these events may be involved in the regulation of gene expression and, in some cases, generate novel protein isoforms...
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