Searching journal content for articles similar to Yang et al. 22 (11): 2199.

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  1. Research: Topologically associating domains and their role in the evolution of genome structure and function in Drosophila
    • Yi Liao,
    • Xinwen Zhang,
    • Mahul Chakraborty,
    • and J.J. Emerson
    Genome Res. March 2021 31: 397-410; Published in Advance February 9, 2021, doi:10.1101/gr.266130.120
    ...; Supplemental Fig. S8). These findings are consistent with previous observations that BEAF-32, CP190, and Chromator are better predictors of TAD boundaries in Drosophila (Ramírez et al. 2018; Wang et al. 2018).View larger version: In this window In a new window Figure 3. Conservation of distinct classes of TAD...
  2. Research: ATAC-seq reveals regional differences in enhancer accessibility during the establishment of spatial coordinates in the Drosophila blastoderm
    • Marta Bozek,
    • Roberto Cortini,
    • Andrea Ennio Storti,
    • Ulrich Unnerstall,
    • Ulrike Gaul,
    • and Nicolas Gompel
    Genome Res. May 2019 29: 771-783; Published in Advance April 8, 2019, doi:10.1101/gr.242362.118
    ...a function of the domain's position along the AP axis.Differential accessibility is a signature of axis patterning enhancersOpen chromatin regions in the Drosophila blastoderm correspond to a range of functional genomic elements, such as transcribed gene bodies, promoters, distal CREs, insulators...
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  3. Research: Chromatin architecture reorganization during neuronal cell differentiation in Drosophila genome
    • Keerthi T. Chathoth and
    • Nicolae Radu Zabet
    Genome Res. April 2019 29: 613-625; Published in Advance February 1, 2019, doi:10.1101/gr.246710.118
    ...of these architectural proteins seems to disrupt TADs architecture unevenly, suggesting there are different types of borders (Zuin et al. 2014; Nora et al. 2017; Schwarzer et al. 2017). In contrast, TAD borders in Drosophila are occupied by a large set of insulator proteins, including CTCF, BEAF-32, Chromator (Chro), Cp...
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  4. Research: Two new insulator proteins, Pita and ZIPIC, target CP190 to chromatin
    • Oksana Maksimenko,
    • Marek Bartkuhn,
    • Viacheslav Stakhov,
    • Martin Herold,
    • Nickolay Zolotarev,
    • Theresa Jox,
    • Melanie K. Buxa,
    • Ramona Kirsch,
    • Artem Bonchuk,
    • Anna Fedotova,
    • Olga Kyrchanova,
    • Rainer Renkawitz,
    • and Pavel Georgiev
    Genome Res. January 2015 25: 89-99; Published in Advance October 23, 2014, doi:10.1101/gr.174169.114
    ...subclasses of a Drosophila insulator show distinct and cell type-specific genomic distributions. Genes Dev 23: 1338–1350. Butcher RD, Chodagam S, Basto R, Wakefield JG, Henderson DS, Raff JW, Whitfield WG. 2004. The Drosophila centrosome-associated protein CP190 is essential for viability but not for cell...
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  5. Research: Drosophila CTCF tandemly aligns with other insulator proteins at the borders of H3K27me3 domains
    • Kevin Van Bortle,
    • Edward Ramos,
    • Naomi Takenaka,
    • Jingping Yang,
    • Jessica E. Wahi,
    • and Victor G. Corces
    Genome Res. November 2012 22: 2176-2187; Published in Advance June 21, 2012, doi:10.1101/gr.136788.111
    ...Drosophila insulator proteins such as Suppressor of Hairy wing [SU(HW)] and Boundary Element Associated Factor of 32 kDa (BEAF-32) at the borders of H3K27me3 domains, which are also enriched for associated insulator proteins and additional cofactors. RNAi depletion of dCTCF and combinatorial knockdown...
  6. Research: Active chromatin and transcription play a key role in chromosome partitioning into topologically associating domains
    • Sergey V. Ulianov,
    • Ekaterina E. Khrameeva,
    • Alexey A. Gavrilov,
    • Ilya M. Flyamer,
    • Pavel Kos,
    • Elena A. Mikhaleva,
    • Aleksey A. Penin,
    • Maria D. Logacheva,
    • Maxim V. Imakaev,
    • Alexander Chertovich,
    • Mikhail S. Gelfand,
    • Yuri Y. Shevelyov,
    • and Sergey V. Razin
    Genome Res. January 2016 26: 70-84; Published in Advance October 30, 2015, doi:10.1101/gr.196006.115
    ...are organized into topologically associating domains (TADs), evolutionary conserved compact chromatin domains that influence gene expression. Mechanisms that underlie partitioning of the genome into TADs remain poorly understood. To explore principles of TAD folding in Drosophila melanogaster , we performed Hi...
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