Searching journal content for articles similar to Yang et al. 13 (7): 1754.

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  1. Research: Analyzing super-enhancer temporal dynamics reveals potential critical enhancers and their gene regulatory networks underlying skeletal muscle development
    • Song Zhang,
    • Chao Wang,
    • Shenghua Qin,
    • Choulin Chen,
    • Yongzhou Bao,
    • Yuanyuan Zhang,
    • Lingna Xu,
    • Qingyou Liu,
    • Yunxiang Zhao,
    • Kui Li,
    • Zhonglin Tang,
    • and Yuwen Liu
    Genome Res. December 2024 34: 2190-2202; Published in Advance October 21, 2024, doi:10.1101/gr.278344.123
    ...by the change in allelic ratios between the output library, including replicate1 (C) and replicate2 (D), and the input library. Statistical significance (false discovery rate [FDR] < 0.05) was evaluated using Fisher's exact test. (E) DNA-binding motif-breaking scores were assessed for regulatory SNPs...
  2. Methods: High definition profiling of mammalian DNA methylation by array capture and single molecule bisulfite sequencing
    • Emily Hodges,
    • Andrew D. Smith,
    • Jude Kendall,
    • Zhenyu Xuan,
    • Kandasamy Ravi,
    • Michelle Rooks,
    • Michael Q. Zhang,
    • Kenny Ye,
    • Arindam Bhattacharjee,
    • Leonardo Brizuela,
    • W. Richard McCombie,
    • Michael Wigler,
    • Gregory J. Hannon,
    • and James B. Hicks
    Genome Res. September 2009 19: 1593-1605; Published in Advance July 6, 2009, doi:10.1101/gr.095190.109
    ...Light) (Eads et al. 2000), and pyrosequencing (Dupont et al. 2004). However, these methods are generally limited by their scalability and cost. Bisulfite sequencing represents the most comprehensive, high-resolution method for determining DNA methylation states. Like SNP detection, the accurate quantification...
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