Searching journal content for articles similar to Yandell et al. 21 (9): 1529.

Displaying results 1-10 of 6309

For checked items

view abstracts
download to citation manager

Select this article
Erratum: Erratum: Expanded methylome and quantitative trait loci detection by long-read profiling of personal DNA
- Cristian Groza,
- Bing Ge,
- Warren A. Cheung,
- Tomi Pastinen,
- and Guillaume Bourque
Genome Res. March 2026 36: 660; doi:10.1101/gr.281963.126
...Cristian Groza, Bing Ge, Warren A. Cheung, Tomi Pastinen and Guillaume Bourque Genome Research 35: 644–652 (2025)Owing to production errors, the panel label of Figure 1E was missing and the hyphen in SV-CpG was incorrectly rendered as a square; and several of the line graph curves were incomplete...
OPEN ACCESS ARTICLE
Select this article
Resource: Quadrupia provides a comprehensive catalog of G-quadruplexes across genomes from the tree of life
- Nikol Chantzi,
- Akshatha Nayak,
- Fotis A. Baltoumas,
- Eleni Aplakidou,
- Shiau Wei Liew,
- Jesslyn Elvaretta Galuh,
- Michail Patsakis,
- Austin Montgomery,
- Camille Moeckel,
- Ioannis Mouratidis,
- Saiful Arefeen Sazed,
- Wilfried Guiblet,
- Panagiotis Karmiris-Obratański,
- Guliang Wang,
- Apostolos Zaravinos,
- Karen M. Vasquez,
- Chun Kit Kwok,
- Georgios A. Pavlopoulos,
- and Ilias Georgakopoulos-Soares
Genome Res. November 2025 35: 2578-2600; Published in Advance August 26, 2025, doi:10.1101/gr.279790.124
...1, Saiful Arefeen Sazed1, Wilfried Guiblet6, Panagiotis Karmiris-Obratański7, Guliang Wang8, Apostolos Zaravinos9,10, Karen M. Vasquez8, Chun Kit Kwok4,5, Georgios A. Pavlopoulos2 and Ilias Georgakopoulos-Soares1 1Institute for Personalized Medicine, Department of Biochemistry and Molecular Biology...
OPEN ACCESS ARTICLE
Select this article
Method: Probabilistic association of differentially expressed genes with cis-regulatory elements
- Brian S. Roberts,
- Ashlyn G. Anderson,
- E. Christopher Partridge,
- Gregory M. Cooper,
- and Richard M. Myers
Genome Res. April 2024 34: 620-632; Published in Advance April 17, 2024, doi:10.1101/gr.278598.123
...lead more directly to insights into the gene regulatory mechanisms at work.We present a method, DegCre, that probabilistically associates CREs to target gene TSSs over a wide range of genomic distances. The premise of DegCre is that true CRE–to–differentially expressed gene (DEG) pairs should change...
Select this article
Research: Expanded methylome and quantitative trait loci detection by long-read profiling of personal DNA
- Cristian Groza,
- Bing Ge,
- Warren A. Cheung,
- Tomi Pastinen,
- and Guillaume Bourque
Genome Res. April 2025 35: 644-652; Published in Advance March 20, 2025, doi:10.1101/gr.279240.124
...G. 2020. Personalized and graph s reveal missing signal in epigenomic data. Genome Biol 21: 124. doi:10.1186/s13059-020-02038-8 ↵Groza C, Chen X, Pacis A, Simon M-M, Pramatarova A, Aracena KA, Pastinen T, Barreiro LB, Bourque G. 2023. Genome graphs detect human polymorphisms in active epigenomic...
Select this article
Method: Secure phasing of private genomes in a trusted execution environment with TX-Phase
- Natnatee Dokmai,
- Kaiyuan Zhu,
- S. Cenk Sahinalp,
- and Hyunghoon Cho
Genome Res. December 2025 35: 2626-2636; Published in Advance November 12, 2025, doi:10.1101/gr.280558.125
...poses a significant challenge in maintaining practical performance under privacy constraints. Here, we introduce TX-Phase, a secure haplotype phasing method based on the framework of trusted execution environments (TEEs). TX-Phase allows users’ private genomic data to be phased while ensuring data...
OPEN ACCESS ARTICLE
Select this article
Method: Uncovering methylation-dependent genetic effects on regulatory element function in diverse genomes
- Rachel M. Petersen,
- Christopher M. Vockley,
- and Amanda J. Lea
Genome Res. August 2025 35: 1781-1793; Published in Advance July 14, 2025, doi:10.1101/gr.279957.124
...of identifying methylation-dependent regulatory activity at many thousands of genomic regions simultaneously and allows for the testing of causal relationships between DNA methylation and gene expression on a region-by-region basis. Here, we develop a multiplexed mSTARR-seq protocol to assay naturally occurring...
OPEN ACCESS ARTICLE
Select this article
Method: GeneMark-ETP significantly improves the accuracy of automatic annotation of large eukaryotic genomes
- Tomáš Brůna,
- Alexandre Lomsadze,
- and Mark Borodovsky
Genome Res. May 2024 34: 757-768; Published in Advance June 12, 2024, doi:10.1101/gr.278373.123
..., Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA Corresponding author: borodovsky@gatech.eduAbstractLarge-scale genomic initiatives, such as the Earth BioGenome Project, require efficient methods for eukaryotic annotation. Here we present an automatic gene finder, GeneMark-ETP, integrating...
OPEN ACCESS ARTICLE
Select this article
Research: Diverse evolutionary trajectories of mitocoding DNA in mammalian and avian nuclear genomes
- Yu-Chi Chen,
- David L.J. Vendrami,
- Maximilian L. Huber,
- Luisa E.Y. Handel,
- Christopher R. Cooney,
- Joseph I. Hoffman,
- and Toni I. Gossmann
Genome Res. June 2025 35: 1313-1324; Published in Advance March 31, 2025, doi:10.1101/gr.279428.124
...and introgression (Gabaldón 2020; Setter et al. 2020; Popadin et al. 2022). Although it is known that an organism's genomic architecture is fundamental to whether hybridization/introgression occurs successfully, we have limited knowledge of the extent to which lateral gene transfer, hybridization, and introgression...
Select this article
Research: Unexpectedly low recombination rates and presence of hotspots in termite genomes
- Turid Everitt,
- Tilman Rönneburg,
- Daniel Elsner,
- Anna Olsson,
- Yuanzhen Liu,
- Tuuli Larva,
- Judith Korb,
- and Matthew T. Webster
Genome Res. May 2025 35: 1124-1137; Published in Advance March 20, 2025, doi:10.1101/gr.279180.124
.... The robustness of the association between eusociality and high recombination rates can therefore be addressed by assessing mean genomic recombination rates in social Blattodea (termites).In addition to variation between species, the rate of recombination also varies along chromosomes. In mammals, crossover...
Select this article
Editorial: Long reads decipher genomes and transcriptomes and offer novel insights into biology and diseases
- Ana Conesa,
- Alexander Hoischen,
- and Fritz J. Sedlazeck
Genome Res. April 2025 35: xi-xiv; doi:10.1101/gr.280665.125
.... 2025. Expanded methylome and quantitative trait loci detection by long-read profiling of personal DNA. Genome Res (this issue) 35: 644–652. doi:10.1101/gr.279240.124 ↵Horsfield ST, Fok BCT, Fu Y, Turner P, Lees JA, Croucher NJ. 2025. Optimizing nanopore adaptive sampling for pneumococcal serotype...

For checked items

view abstracts
download to citation manager

Searching journal content for articles similar to Yandell et al. 21 (9): 1529.

Search Results

Modify Results

This search

Preprint Server

Current Issue

In This Issue

Citation format:
Results / page:
Results order: