Searching journal content for articles similar to Xu et al. 23 (11): 1810.

Displaying results 1-10 of 113

For checked items

view abstracts
download to citation manager

Select this article
Research: Evidence for compensatory evolution within pleiotropic regulatory elements
- Zane Kliesmete,
- Peter Orchard,
- Victor Yan Kin Lee,
- Johanna Geuder,
- Simon M. Krauß,
- Mari Ohnuki,
- Jessica Jocher,
- Beate Vieth,
- Wolfgang Enard,
- and Ines Hellmann
Genome Res. October 2024 34: 1528-1539; Published in Advance September 10, 2024, doi:10.1101/gr.279001.124
...Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, Michigan 48109-2218, USA; 3Section for Molecular Ecology and Evolution, Globe Institute, University of Copenhagen, 1350 Copenhagen, Denmark; 4Department of Hematology, Cell Therapy, Hemostaseology and Infectious...
OPEN ACCESS ARTICLE
Select this article
Research: Comparative transcriptomics of primary cells in vertebrates
- Tanvir Alam,
- Saumya Agrawal,
- Jessica Severin,
- Robert S. Young,
- Robin Andersson,
- Erik Arner,
- Akira Hasegawa,
- Marina Lizio,
- Jordan A. Ramilowski,
- Imad Abugessaisa,
- Yuri Ishizu,
- Shohei Noma,
- Hiroshi Tarui,
- Martin S. Taylor,
- Timo Lassmann,
- Masayoshi Itoh,
- Takeya Kasukawa,
- Hideya Kawaji,
- Luigi Marchionni,
- Guojun Sheng,
- Alistair R.R. Forrest,
- Levon M. Khachigian,
- Yoshihide Hayashizaki,
- Piero Carninci,
- and Michiel J.L. de Hoon
Genome Res. July 2020 30: 951-961; Published in Advance July 27, 2020, doi:10.1101/gr.255679.119
...comparative analysis to the expression levels of microRNAs (miRNAs). miRNAs are small noncoding RNA (typically 22 nt) that silence mRNA post-transcriptionally and regulate biological processes such as cell growth and differentiation by functional effects on direct targets and regulatory networks (Bracken et...
OPEN ACCESS ARTICLE
Select this article
Research: Rapid evolution of piRNA clusters in the Drosophila melanogaster ovary
- Satyam P. Srivastav,
- Cédric Feschotte,
- and Andrew G. Clark
Genome Res. May 2024 34: 711-724; Published in Advance May 15, 2024, doi:10.1101/gr.278062.123
...in Drosophila melanogaster, much less is known about the origin and evolution of piCs in this or any other species. To investigate piC origin and evolution, we use a population genomic approach to compare piC activity and sequence composition across eight geographically distant strains of D. melanogaster...
Select this article
Research: microRNA target prediction programs predict many false positives
- Natalia Pinzón,
- Blaise Li,
- Laura Martinez,
- Anna Sergeeva,
- Jessy Presumey,
- Florence Apparailly,
- and Hervé Seitz
Genome Res. February 2017 27: 234-245; Published in Advance November 15, 2016, doi:10.1101/gr.205146.116
...it is conserved in evolution. Lists of miRNA targets found by molecular biology experiments or by computational predictions are frequently used to infer False positives in microRNA target identification Genome Research 241 www..org miRNA biological functions: Depending on prediction programs, false positive rates...
Select this article
Research: GC-biased gene conversion drives accelerated evolution of ultraconserved elements in mammalian and avian genomes
- Anguo Liu,
- Nini Wang,
- Guoxiang Xie,
- Yang Li,
- Xixi Yan,
- Xinmei Li,
- Zhenliang Zhu,
- Zhuohui Li,
- Jing Yang,
- Fanxin Meng,
- Mingle Dou,
- Weihuang Chen,
- Nange Ma,
- Yu Jiang,
- Yuanpeng Gao,
- and Yu Wang
Genome Res. October 2023 33: 1673-1689; Published in Advance October 26, 2023, doi:10.1101/gr.277784.123
...rapidly evolved in specific lineages, and whether they contributed to adaptive evolution is still controversial. Here, using an increased number of sequenced s with high taxonomic coverage, we identified 2191 mammalian UCEs and 5938 avian UCEs from 95 mammal and 94 bird s, respectively. Our results show...
Select this article
Research: Conserved microRNA targeting reveals preexisting gene dosage sensitivities that shaped amniote sex chromosome evolution
- Sahin Naqvi,
- Daniel W. Bellott,
- Kathy S. Lin,
- and David C. Page
Genome Res. April 2018 28: 474-483; Published in Advance February 15, 2018, doi:10.1101/gr.230433.117
...Chromosome inactivation (XCI) in females, but some Y-linked genes were retained during the course of sex chromosome evolution, and many X-linked genes did not become subject to XCI. We reconstructed gene-by-gene dosage sensitivities on the ancestral autosomes through phylogenetic analysis of microRNA (mi...
OPEN ACCESS ARTICLE
Select this article
Research: MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
- Maria Ninova,
- Matthew Ronshaugen,
- and Sam Griffiths-Jones
Genome Res. January 2016 26: 85-96; Published in Advance October 30, 2015, doi:10.1101/gr.193367.115
...transcripts. Comparison with Drosophila shows that microRNA-mediated maternal transcript targeting is a conserved process in insects, but the number and sequences of microRNAs involved have diverged. The expression of fast-evolving and species-specific microRNAs in the early blastoderm of T. castaneum...
OPEN ACCESS ARTICLE
Select this article
Resource: A mosquito small RNA genomics resource reveals dynamic evolution and host responses to viruses and transposons
- Qicheng Ma,
- Satyam P. Srivastav,
- Stephanie Gamez,
- Gargi Dayama,
- Fabiana Feitosa-Suntheimer,
- Edward I. Patterson,
- Rebecca M. Johnson,
- Erik M. Matson,
- Alexander S. Gold,
- Douglas E. Brackney,
- John H. Connor,
- Tonya M. Colpitts,
- Grant L. Hughes,
- Jason L. Rasgon,
- Tony Nolan,
- Omar S. Akbari,
- and Nelson C. Lau
Genome Res. March 2021 31: 512-528; Published in Advance January 8, 2021, doi:10.1101/gr.265157.120
...hosts.Three main classes of animal small regulatory RNAs are microRNAs (miRNAs) and endogenous small interfering RNAs (endo-siRNAs), which range in size between 18 and 23 nt long and are typically bound by Argonaute proteins; and Piwi-interacting RNAs (piRNAs) that are bound by Piwi proteins and mainly...
OPEN ACCESS ARTICLE
Select this article
Research: Birth and expression evolution of mammalian microRNA genes
- Julien Meunier,
- Frédéric Lemoine,
- Magali Soumillon,
- Angélica Liechti,
- Manuela Weier,
- Katerina Guschanski,
- Haiyang Hu,
- Philipp Khaitovich,
- and Henrik Kaessmann
Genome Res. January 2013 23: 34-45; Published in Advance October 3, 2012, doi:10.1101/gr.140269.112
...miRNA families. Notably, similar results are obtained for ancient and recent families when these are analyzed separately and using TargetScan target predictions (Supplemental Fig. S15). Genome Research 39 www..org Evolution of mammalian microRNA genes To explore the functional relevance...
OPEN ACCESS ARTICLE
Select this article
Research: Sex-biased microRNA expression in mammals and birds reveals underlying regulatory mechanisms and a role in dosage compensation
- Maria Warnefors,
- Katharina Mössinger,
- Jean Halbert,
- Tania Studer,
- John L. VandeBerg,
- Isa Lindgren,
- Amir Fallahshahroudi,
- Per Jensen,
- and Henrik Kaessmann
Genome Res. December 2017 27: 1961-1973; Published in Advance October 27, 2017, doi:10.1101/gr.225391.117
...revealed thousands of sex-biased genes in mammals and birds (Yang et al. 2006; Itoh et al. 2010; Harrison et al. 2015; Melé et al. 2015). Less attention has been given to the potential impact of sex-biased microRNAs (miRNAs)—short regulatory RNAs (∼21 nt) that enable expression fine-tuning of target m...
OPEN ACCESS ARTICLE

For checked items

view abstracts
download to citation manager

Searching journal content for articles similar to Xu et al. 23 (11): 1810.

Search Results

Modify Results

This search

Preprint Server

Current Issue

In This Issue

Citation format:
Results / page:
Results order: