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Methods: Microfabricated Fountain Pens for High-Density DNA Arrays
- Matthew O. Reese,
- R. Michae van Dam,
- Axel Scherer,
- and Stephen R. Quake
Genome Res. October 2003 13: 2348-2352; Published in Advance January 1, 2003, doi:10.1101/gr.623903
.... 2000 ) to reverse engineering biological circuits and pathways ( DeRisi et al. 1997 ; Chu et al. 1998 ; Lockhart and Winzeler 2000 ). Extremely high density microarrays that may fit an entire on a single substrate are desirable for a number of reasons, including sensitivity, cost, convenience...
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LETTER: Parallel Genotyping of Human SNPs Using Generic High-density Oligonucleotide Tag Arrays
- Jian-Bing Fan,
- Xiaoqiong Chen,
- Marc K. Halushka,
- Anthony Berno,
- Xiaohua Huang,
- Thomas Ryder,
- Robert J. Lipshutz,
- David J. Lockhart,
- and Aravinda Chakravarti
Genome Res. June 1, 2000 10: 853-860; doi:10.1101/gr.10.6.853
...Parallel Genotyping of Human SNPs Using Generic High-density Oligonucleotide Tag Arrays Jian-Bing Fan 1 , 3 , Xiaoqiong Chen 1 , Marc K. Halushka 2 , Anthony Berno 1 , Xiaohua Huang 1 , 4 , Thomas Ryder 1 , Robert J...
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Methods: Genome-wide detection of human copy number variations using high-density DNA oligonucleotide arrays
- Daisuke Komura,
- Fan Shen,
- Shumpei Ishikawa,
- Karen R. Fitch,
- Wenwei Chen,
- Jane Zhang,
- Guoying Liu,
- Sigeo Ihara,
- Hiroshi Nakamura,
- Matthew E. Hurles,
- Charles Lee,
- Stephen W. Scherer,
- Keith W. Jones,
- Michael H. Shapero,
- Jing Huang,
- and Hiroyuki Aburatani
Genome Res. December 2006 16: 1575-1584; Published in Advance November 22, 2006, doi:10.1101/gr.5629106
..., S. , Tsai, Y.-Y. , Fang, J. , Law, J. , Di, X. , Liu, W.-M. , Yang, G. , Liu, G. , et al. ( 2004b ) Parallel genotyping of over 10,000 SNPs using a one-primer assay on a high density oligonucleotide array . Genome Res. 14 : 414 – 425 . ↵ McCarrol, S.A. , Hadnott, T.N. , Perry, G.H. , Sabeti, P...
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Methods: High-density haplotyping with microarray-based expression and single feature polymorphism markers in Arabidopsis
- Marilyn A.L. West,
- Hans van Leeuwen,
- Alexander Kozik,
- Daniel J. Kliebenstein,
- R.W. Doerge,
- Dina A. St. Clair,
- and Richard W. Michelmore
Genome Res. June 2006 16: 787-795; Published in Advance May 15, 2006, doi:10.1101/gr.5011206
...High-density haplotyping with microarray-based expression and single feature polymorphism markers in Arabidopsis High-density haplotyping with microarrays Marilyn A.L. West 1 , 4 , Hans van Leeuwen 1 , Alexander Kozik 2 , Daniel J. Kliebenstein 1...
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Methods: Parallel Genotyping of Over 10,000 SNPs Using a One-Primer Assay on a High-Density Oligonucleotide Array
- Hajime Matsuzaki,
- Halina Loi,
- Shoulian Dong,
- Ya-Yu Tsai,
- Joy Fang,
- Jane Law,
- Xiaojun Di,
- Wei-Min Liu,
- Geoffrey Yang,
- Guoying Liu,
- Jing Huang,
- Giulia C. Kennedy,
- Thomas B. Ryder,
- Gregory A. Marcus,
- P. Sean Walsh,
- Mark D. Shriver,
- Jennifer M. Puck,
- Keith W. Jones,
- and Rui Mei
Genome Res. March 2004 14: 414-425; doi:10.1101/gr.2014904
...Parallel Genotyping of Over 10,000 SNPs Using a One-Primer Assay on a High-Density Oligonucleotide Array Hajime Matsuzaki 1 , Halina Loi 1 , Shoulian Dong 1 , Ya-Yu Tsai 2 , Joy Fang 1 , Jane Law 1 , Xiaojun Di 1...
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Methods: Tracking the Evolution of the SARS Coronavirus Using High-Throughput, High-Density Resequencing Arrays
- Christopher W. Wong,
- Thomas J. Albert,
- Vinsensius B. Vega,
- Jason E. Norton,
- David J. Cutler,
- Todd A. Richmond,
- Lawrence W. Stanton,
- Edison T. Liu,
- and Lance D. Miller
Genome Res. March 2004 14: 398-405; doi:10.1101/gr.2141004
...Tracking the Evolution of the SARS Coronavirus Using High-Throughput, High-Density Resequencing Arrays Christopher W. Wong 1 , 4 , Thomas J. Albert 2 , Vinsensius B. Vega 1 , Jason E. Norton 2 , David J. Cutler 3 , Todd A. Richmond 2...
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ARTICLE: Genome-wide Detection of Allelic Imbalance Using Human SNPs and High-density DNA Arrays
- Rui Mei,
- Patricia C. Galipeau,
- Cynthia Prass,
- Anthony Berno,
- Ghassan Ghandour,
- Nila Patil,
- Roger K. Wolff,
- Mark S. Chee,
- Brian J. Reid,
- and David J. Lockhart
Genome Res. August 1, 2000 10: 1126-1137; doi:10.1101/gr.10.8.1126
...Genome-wide Detection of Allelic Imbalance Using Human SNPs and High-density DNA Arrays Rui Mei 1 , 7 , Patricia C. Galipeau 2 , Cynthia Prass 3 , Anthony Berno 1 , Ghassan Ghandour 4 , Nila Patil 1 , Roger K. Wolff 3...
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Letter: Fine-scaled human genetic structure revealed by SNP microarrays
- Jinchuan Xing,
- W. Scott Watkins,
- David J. Witherspoon,
- Yuhua Zhang,
- Stephen L. Guthery,
- Rangaswamy Thara,
- Bryan J. Mowry,
- Kazima Bulayeva,
- Robert B. Weiss,
- and Lynn B. Jorde
Genome Res. May 2009 19: 815-825; doi:10.1101/gr.085589.108
...in this study have been genotyped previously for other types of polymorphisms (Jorde et al. 1997; Watkins et al. 2003, 2005; Wooding et al. 2004). For these individuals, we examined the concordance of between-population genetic distances based on the high-density SNP data and other types of autosomal...
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METHODS: Rapid Mapping of Zebrafish Mutations With SNPs and Oligonucleotide Microarrays
- Heather L. Stickney,
- Jeremy Schmutz,
- Ian G. Woods,
- Caleb C. Holtzer,
- Mark C. Dickson,
- Peter D. Kelly,
- Richard M. Myers,
- and William S. Talbot
Genome Res. December 1, 2002 12: 1929-1934; doi:10.1101/gr.777302
...) The construction of a first generation single nucleotide polymorphism (SNP) map of the zebrafish genome comprising 2035 SNPs and 178 small insertions/deletions, and (2) the development of a method for mapping mutations in which hundreds of SNPs can be scored in parallel with an oligonucleotide microarray. We have...
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METHODS: High-Throughput Variation Detection and Genotyping Using Microarrays
- David J. Cutler,
- Michael E. Zwick,
- Minerva M. Carrasquillo,
- Christopher T. Yohn,
- Katherine P. Tobin,
- Carl Kashuk,
- Debra J. Mathews,
- Nila A. Shah,
- Evan E. Eichler,
- Janet A. Warrington,
- and Aravinda Chakravarti
Genome Res. November 1, 2001 11: 1913-1925; Published in Advance October 15, 2001, doi:10.1101/gr.197201
.... The error rate needs to be much lower. Microarrays are inherently parallel devices that offer the promise of determining the genotypes of individuals at every site of interest with a limited level of effort ( Fodor et al. 1991 ; Southern et al. 1992 ; Pease et al. 1994 ; McGall et al. 1996 ; Lipshutz et al...

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