Searching journal content for articles similar to Xing et al. 14 (3): 426.

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  1. Methods: ECgene: Genome-based EST clustering and gene modeling for alternative splicing
    • Namshin Kim,
    • Seokmin Shin,
    • and Sanghyuk Lee
    Genome Res. April 2005 15: 566-576; doi:10.1101/gr.3030405
    ...from genomic DNA are included in the dbEST. The original UniGene algorithm, a transcript-based clustering, solved this problem of genomic contaminants by using “anchored” clusters with polyA signal or tail ( http://www.ncbi.nlm.nih.gov/UniGene ). In the -based clustering, genomic contaminants can...
  2. RESOURCE: Genome-wide assembly and analysis of alternative transcripts in mouse
    • Alexei A. Sharov,
    • Dawood B. Dudekula,
    • and Minoru S.H. Ko
    Genome Res. May 2005 15: 748-754; doi:10.1101/gr.3269805
    .... 2004 . The multiassembly problem: Reconstructing multiple transcript isoforms from EST fragment mixtures. Genome Res. 14 : 426 –441. ↵ Zavolan, M., Kondo, S., Schonbach, C., Adachi, J., Hume, D.A., Hayashizaki, Y., and Gaasterland, T. 2003 . Impact of alternative initiation, splicing, and termination...
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  3. LETTER: Evolution of alternative splicing after gene duplication
    • Zhixi Su,
    • Jianmin Wang,
    • Jun Yu,
    • Xiaoqiu Huang,
    • and Xun Gu
    Genome Res. February 2006 16: 182-189; Published in Advance December 19, 2005, doi:10.1101/gr.4197006
    ...against premature protein truncation is reduced by alternative splicing and diploidy. Trends Genet. 20 : 472 -475. ↵ Xing, Y., Resch, A., and Lee, C. 2004 . The multiassembly problem: Reconstructing multiple transcript isoforms from EST fragment mixtures. Genome Res. 14 : 426 -441. ↵ Yu, W.P., Brenner, S...
  4. Methods: Gene and alternative splicing annotation with AIR
    • Liliana Florea,
    • Valentina Di Francesco,
    • Jason Miller,
    • Russell Turner,
    • Alison Yao,
    • Michael Harris,
    • Brian Walenz,
    • Clark Mobarry,
    • Gennady V. Merkulov,
    • Rosane Charlab,
    • Ian Dew,
    • Zuoming Deng,
    • Sorin Istrail,
    • Peter Li,
    • and Granger Sutton
    Genome Res. January 2005 15: 54-66; doi:10.1101/gr.2889405
    ...of cases, multiple spliced alignments indistinguishable by the criteria of coverage, sequence identity, and number of exons may be reported as “best matches”). One possible solution to this problem is to search for matches of predicted AIR transcripts in the rest of the rat . From a computational...
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