Searching journal content for articles similar to Wu et al. 24 (3): 475.

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  1. Method: Unified modeling of gene duplication, loss, and coalescence using a locus tree
    • Matthew D. Rasmussen and
    • Manolis Kellis
    Genome Res. April 2012 22: 755-765; Published in Advance January 23, 2012, doi:10.1101/gr.123901.111
    ...Unified modeling of gene duplication, loss, and coalescence using a locus tree Matthew D. Rasmussen 1 and Manolis Kellis 1 Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA...
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  2. Method: Genome-scale coestimation of species and gene trees
    • Bastien Boussau,
    • Gergely J. Szöllősi,
    • Laurent Duret,
    • Manolo Gouy,
    • Eric Tannier,
    • and Vincent Daubin
    Genome Res. February 2013 23: 323-330; Published in Advance November 6, 2012, doi:10.1101/gr.141978.112
    ...analysis under the duplication-loss and deep coalescence cost models. BMC Bioinformatics 11: S42. Genome-scale coestimation of species and gene trees Genome Research 329 www..org Chaudhary R, Bansal M, Wehe A, Fernandez-Baca D, Eulenstein O. 2010. igtp: A software package for large-scale gene tree...
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  3. 12 Drosophila Genomes/Methods: Accurate gene-tree reconstruction by learning gene- and species-specific substitution rates across multiple complete genomes
    • Matthew D. Rasmussen and
    • Manolis Kellis
    Genome Res. December 2007 17: 1932-1942; Published in Advance November 7, 2007, doi:10.1101/gr.7105007
    ...branch-length distributions for gene-tree reconstruction in a generative model for gene tree evolution. A potential future direction for both types of work may be a joint modeling of deep coalescence and gene duplication/loss. The methodology introduced here, although general, allowed us to address...
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