Searching journal content for articles similar to Wu et al. 21 (4): 578.

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  1. Research: Chromatin architecture transitions from zebrafish sperm through early embryogenesis
    • Candice L. Wike,
    • Yixuan Guo,
    • Mengyao Tan,
    • Ryohei Nakamura,
    • Dana Klatt Shaw,
    • Noelia Díaz,
    • Aneasha F. Whittaker-Tademy,
    • Neva C. Durand,
    • Erez Lieberman Aiden,
    • Juan M. Vaquerizas,
    • David Grunwald,
    • Hiroyuki Takeda,
    • and Bradley R. Cairns
    Genome Res. June 2021 31: 981-994; Published in Advance May 18, 2021, doi:10.1101/gr.269860.120
    ...gamete cells to discern whether it either resembles or informs early pre-ZGA zebrafish embryo chromatin architecture. First, we assessed the higher-order architecture through advanced low-cell in situ Hi-C. The structure of zebrafish sperm, packaged by histones, lacks topological associated domains...
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  2. Research: Sperm is epigenetically programmed to regulate gene transcription in embryos
    • Marta Teperek,
    • Angela Simeone,
    • Vincent Gaggioli,
    • Kei Miyamoto,
    • George E. Allen,
    • Serap Erkek,
    • Taejoon Kwon,
    • Edward M. Marcotte,
    • Philip Zegerman,
    • Charles R. Bradshaw,
    • Antoine H.F.M. Peters,
    • John B. Gurdon,
    • and Jerome Jullien
    Genome Res. August 2016 26: 1034-1046; Published in Advance March 31, 2016, doi:10.1101/gr.201541.115
    ...of developmentally important genes. During spermatid maturation into sperm, these genes lose H3K4me2/3 and retain H3K27me3 marks. Experimental removal of these epigenetic marks at fertilization de-regulates gene expression in the resulting embryos in a paternal chromatin-dependent manner. This demonstrates...
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  3. Research: Inherited DNA methylation primes the establishment of accessible chromatin during genome activation
    • Guifen Liu,
    • Wen Wang,
    • Shengen Hu,
    • Xiangxiu Wang,
    • and Yong Zhang
    Genome Res. July 2018 28: 998-1007; Published in Advance May 29, 2018, doi:10.1101/gr.228833.117
    .... Genes for embryo development are packaged in blocks of multivalent chromatin in zebrafish sperm. Genome Res 21: 578–589. ↵Wu J, Huang B, Chen H, Yin Q, Liu Y, Xiang Y, Zhang B, Liu B, Wang Q, Xia W, et al. 2016. The landscape of accessible chromatin in mammalian preimplantation embryos. Nature 534: 652...
  4. Research: Epigenetic analyses of planarian stem cells demonstrate conservation of bivalent histone modifications in animal stem cells
    • Anish Dattani,
    • Damian Kao,
    • Yuliana Mihaylova,
    • Prasad Abnave,
    • Samantha Hughes,
    • Alvina Lai,
    • Sounak Sahu,
    • and A. Aziz Aboobaker
    Genome Res. October 2018 28: 1543-1554; Published in Advance August 24, 2018, doi:10.1101/gr.239848.118
    ...-Cl at pH 8.0, 10 mM EDTA, 1% SDS). Protein was separated from Dynabeads by incubating for 15 min at 65°C on a shaking heat block at 1400 rpm. Eluates were de-crosslinked at 65°C overnight. Input chromatin (one-eighth of the total chromatin amount) was also de-crosslinked at this point. Following...
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