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Research: Redundant and incoherent regulations of multiple phenotypes suggest microRNAs’ role in stability control
- Zhongqi Liufu,
- Yixin Zhao,
- Li Guo,
- Guangxia Miao,
- Juan Xiao,
- Yang Lyu,
- Yuxin Chen,
- Suhua Shi,
- Tian Tang,
- and Chung-I Wu
Genome Res. October 2017 27: 1665-1673; Published in Advance September 13, 2017, doi:10.1101/gr.222505.117
...in the canalization of transcriptome and, hence, phenotypes. [Supplemental material is available for this article.] MicroRNAs (miRNAs) are a class of small RNAs, 22 nt long, that broadly and weakly repress gene expression in animals (Lai 2003; Bartel 2004, 2009). They are very abundant, are often highly conserved...
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Research: The evolution of evolvability in microRNA target sites in vertebrates
- Jin Xu,
- Rui Zhang,
- Yang Shen,
- Guojing Liu,
- Xuemei Lu,
- and Chung-I Wu
Genome Res. November 2013 23: 1810-1816; Published in Advance September 27, 2013, doi:10.1101/gr.148916.112
...a significant impact on 39UTR evolution. Cell 123: 1133–1146. Tang T, Kumar S, Shen Y, Lu J, WuM-L, Shi S, Li W-H,Wu C-I. 2010. Adverse interactions between micro-RNAs and target genes from different species. Proc Natl Acad Sci 107: 12935–12940. Wu C-I, Shen Y, Tang T. 2009. Evolution under canalization...
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Research: Death of new microRNA genes in Drosophila via gradual loss of fitness advantages
- Guang-An Lu,
- Yixin Zhao,
- Hao Yang,
- Ao Lan,
- Suhua Shi,
- Zhongqi Liufu,
- Yumei Huang,
- Tian Tang,
- Jin Xu,
- Xu Shen,
- and Chung-I Wu
Genome Res. September 2018 28: 1309-1318; Published in Advance July 26, 2018, doi:10.1101/gr.233809.117
..., Xu NL, Mahuvakar VR, Andersen MR. 2005. Real-time quantification of microRNAs by stem–loop RT–PCR. Nucleic Acids Res 33: e179. ↵Chen S, Krinsky BH, Long M. 2013. New genes as drivers of phenotypic evolution. Nat Rev Genet 14: 645–660. ↵Chen Y, Allesina S, Shen Y, Wu C-I. 2017. From foodwebs to gene...
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Research: Impact of microRNA regulation on variation in human gene expression
- Jian Lu and
- Andrew G. Clark
Genome Res. July 2012 22: 1243-1254; Published in Advance March 28, 2012, doi:10.1101/gr.132514.111
...is available for this article.] ‘‘Canalization’’ is a term that was coined to describe the ability of living organisms to buffer against phenotypic variation, despite ubiquitous environmental or genotypic perturbations (Waddington 1942, 1953, 1956). MicroRNAs (miRNAs) have recently been postulated...
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Preface: On the origin of Darwinism
- Hillary E. Sussman
Genome Res. May 2009 19: 691-692; doi:10.1101/gr.094458.109
.... Non-Darwinian estimation: My ancestors, my genes’ ancestors. Genome Res. (this issue). doi: 10.1101/ gr.076539.108. Wu, C.-I, Shen, Y., and Tang, T. 2009. Evolution under canalization and the dual roles of microRNAs—A hypothesis. Genome Res. (this issue). doi: 10.1101/gr.084640.108. 692 Genome...
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Method: Differential genome-wide profiling of tandem 3′ UTRs among human breast cancer and normal cells by high-throughput sequencing
- Yonggui Fu,
- Yu Sun,
- Yuxin Li,
- Jie Li,
- Xingqiang Rao,
- Chong Chen,
- and Anlong Xu
Genome Res. May 2011 21: 741-747; Published in Advance April 7, 2011, doi:10.1101/gr.115295.110
...and the dual roles of microRNAs: A hypothesis. Genome Res 19: 734–743. Zaretzki RL, Gilchrist MA, BriggsWM, Armagan A. 2010. Bias correction and Bayesian analysis of aggregate counts in SAGE libraries. BMC Bioinformatics 11: 72. Received September 13, 2010; accepted in revised form March 4, 2011. Genome...

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