Searching journal content for articles similar to Woischnik and Moraes 12 (6): 885.

Displaying results 1-10 of 130

For checked items

view abstracts
download to citation manager

Select this article
Research: Chimeric mitochondrial RNA transcripts predict mitochondrial genome deletion mutations in mitochondrial genetic diseases and aging
- Amy R. Vandiver,
- Allen Herbst,
- Paul Stothard,
- and Jonathan Wanagat
Genome Res. January 2025 35: 55-65; Published in Advance November 27, 2024, doi:10.1101/gr.279072.124
..., Golovko G, Rojas M, Pavlidis I, Chumakov S, Aguilar G, Chávez A, Widger WR, et al. 2016. The ability of human nuclear DNA to cause false positive low-abundance heteroplasmy calls varies across the mitochondrial . BMC Genomics 17: 1017. doi:10.1186/s12864-016-3375-x ↵Barends M, Verschuren L, Morava E...
Select this article
Research: Diverse evolutionary trajectories of mitocoding DNA in mammalian and avian nuclear genomes
- Yu-Chi Chen,
- David L.J. Vendrami,
- Maximilian L. Huber,
- Luisa E.Y. Handel,
- Christopher R. Cooney,
- Joseph I. Hoffman,
- and Toni I. Gossmann
Genome Res. June 2025 35: 1313-1324; Published in Advance March 31, 2025, doi:10.1101/gr.279428.124
...of related species. Note that the gray branch is a separate background branch because it denotes the branch when the potential nuclear genomic integration took place.Selection analysis on isolated dcNUMT genes imply noncanonical NUMT integrations and “missing” mitochondrial sWe first conducted a codon...
Select this article
Resource: CGC1, a new reference genome for Caenorhabditis elegans
- Kazuki Ichikawa,
- Massa J. Shoura,
- Karen L. Artiles,
- Dae-Eun Jeong,
- Chie Owa,
- Haruka Kobayashi,
- Yoshihiko Suzuki,
- Manami Kanamori,
- Yu Toyoshima,
- Yuichi Iino,
- Ann E. Rougvie,
- Lamia Wahba,
- Andrew Z. Fire,
- Erich M. Schwarz,
- and Shinichi Morishita
Genome Res. August 2025 35: 1902-1918; Published in Advance July 15, 2025, doi:10.1101/gr.280274.124
...-coding genes, and StringTie transcriptsOf 19,972 nuclear protein-coding genes in N2 (WS292), 19,790 (99.1%) of N2 protein-coding genes encoded at least one unchanged product after mapping to CGC1. There were 46 protein-coding genes of N2 that, when lifted over to CGC1, overlapped AUGUSTUS predictions that also...
OPEN ACCESS ARTICLE
Select this article
Resource: High-quality assembly of the Chinese white truffle genome and recalibrated divergence time estimate provide insight into the evolutionary dynamics of Tuberaceae
- Jacopo Martelossi,
- Jacopo Vujovic,
- Yue Huang,
- Alessia Tatti,
- Kaiwei Xu,
- Federico Puliga,
- Yuanxue Chen,
- Omar Rota Stabelli,
- Fabrizio Ghiselli,
- Xiaoping Zhang,
- and Alessandra Zambonelli
Genome Res. November 2025 35: 2601-2616; Published in Advance August 21, 2025, doi:10.1101/gr.280368.124
...kb mitochondrial , for which we obtained a complete and circularized sequence, whereas contigs 19–29 contain only 45S rDNA arrays. We found an enrichment of TTAGGG telomere repeats, typical of many eukaryotes, including true truffles (Martin et al. 2010), toward both ends of all 17 majors nuclear...
Select this article
Resource: Construction and evaluation of a new rat reference genome assembly, GRCr8, from long reads and long-range scaffolding
- Kai Li,
- Melissa L. Smith,
- J. Chris Blazier,
- Kelli J. Kochan,
- Jonathan M.D. Wood,
- Kerstin Howe,
- Anne E. Kwitek,
- Melinda R. Dwinell,
- Hao Chen,
- Julia L. Ciosek,
- Patrick Masterson,
- Terence D. Murphy,
- Theodore S. Kalbfleisch,
- and Peter A. Doris
Genome Res. November 2024 34: 2081-2093; Published in Advance November 8, 2024, doi:10.1101/gr.279292.124
...in the assembly. As such, reads that would have mapped to ChrM mapped to the nuclear-embedded mitochondrial (NUMT) DNA sequences instead. In some cases, this would have resulted in Pilon editing the nuclear to match alleles found in the mitochondrial . These artifacts along with the other homozygous differences...
Select this article
Research: The Chinese longsnout catfish genome provides novel insights into the feeding preference and corresponding metabolic strategy of carnivores
- Yulong Liu,
- Gang Zhai,
- Jingzhi Su,
- Yulong Gong,
- Bingyuan Yang,
- Qisheng Lu,
- Longwei Xi,
- Yutong Zheng,
- Jingyue Cao,
- Haokun Liu,
- Junyan Jin,
- Zhimin Zhang,
- Yunxia Yang,
- Xiaoming Zhu,
- Zhongwei Wang,
- Gaorui Gong,
- Jie Mei,
- Zhan Yin,
- Rodolphe E. Gozlan,
- Shouqi Xie,
- and Dong Han
Genome Res. July 2024 34: 981-996; Published in Advance August 9, 2024, doi:10.1101/gr.278476.123
...ATP and ligating the cross-linked fragments to the blunt end. Proximal chromatin DNA was religated with the ligation enzyme. Nuclear complexes were reverse-cross-linked by incubation with Proteinase K at 65°C. DNA was purified by phenol–chloroform extraction. Biotin was removed from the ends of unligated fragments...
OPEN ACCESS ARTICLE
Select this article
Research: Human primitive brain displays negative mitochondrial-nuclear expression correlation of respiratory genes
- Gilad Barshad,
- Amit Blumberg,
- Tal Cohen,
- and Dan Mishmar
Genome Res. July 2018 28: 952-967; Published in Advance June 14, 2018, doi:10.1101/gr.226324.117
...interactions between mitochondrial (mtDNA)- and nuclear (nDNA)-encoded protein subunits. Although such interactions are fundamental to OXPHOS, bi-genomic coregulation is poorly understood. To address this question, we analyzed ∼8500 RNA-seq experiments from 48 human body sites. Despite well-known variation...
Select this article
Research: An atlas of fish genome evolution reveals delayed rediploidization following the teleost whole-genome duplication
- Elise Parey,
- Alexandra Louis,
- Jérôme Montfort,
- Yann Guiguen,
- Hugues Roest Crollius,
- and Camille Berthelot
Genome Res. September 2022 32: 1685-1697; Published in Advance August 12, 2022, doi:10.1101/gr.276953.122
...in their nuclear organization and topological features, which prevented rediploidization, whereas sequence exchanges at LORe loci on other homeologs may have been locally maintained as a result of selection, for example by removing deleterious mutations or transferring favorable alleles at all gene loci...
Select this article
Method: Low-input RNase footprinting for simultaneous quantification of cytosolic and mitochondrial translation
- Qianru Li,
- Haiwang Yang,
- Emily K. Stroup,
- Hongbin Wang,
- and Zhe Ji
Genome Res. March 2022 32: 545-557; Published in Advance February 22, 2022, doi:10.1101/gr.276139.121
...maps mitochondrial translationMitochondria have their own translation machinery to generate the 13 proteins encoded by the mitochondrial , which are all subunits of respiratory chain complexes (Pearce et al. 2017). As proteins composing the mitochondrial translation machinery are encoded by the nuclear...
Select this article
Resource: The genome of the colonial hydroid Hydractinia reveals that their stem cells use a toolkit of evolutionarily shared genes with all animals
- Christine E. Schnitzler,
- E. Sally Chang,
- Justin Waletich,
- Gonzalo Quiroga-Artigas,
- Wai Yee Wong,
- Anh-Dao Nguyen,
- Sofia N. Barreira,
- Liam B. Doonan,
- Paul Gonzalez,
- Sergey Koren,
- James M. Gahan,
- Steven M. Sanders,
- Brian Bradshaw,
- Timothy Q. DuBuc,
- Febrimarsa,
- Danielle de Jong,
- Eric P. Nawrocki,
- Alexandra Larson,
- Samantha Klasfeld,
- Sebastian G. Gornik,
- R. Travis Moreland,
- Tyra G. Wolfsberg,
- Adam M. Phillippy,
- James C. Mullikin,
- Oleg Simakov,
- Paulyn Cartwright,
- Matthew Nicotra,
- Uri Frank,
- and Andreas D. Baxevanis
Genome Res. March 2024 34: 498-513; Published in Advance March 20, 2024, doi:10.1101/gr.278382.123
...mitochondrial chromosomes in the absence of telomeric sequences (Supplemental Fig. S10). In addition, the presence of nonfunctional (and gradually degrading) nuclear copies of mtDNA (NUMTs) have previously been identified in H. vulgaris (Song et al. 2013). Sequence similarity searches did not detect NUMTs...
OPEN ACCESS ARTICLE

For checked items

view abstracts
download to citation manager

Searching journal content for articles similar to Woischnik and Moraes 12 (6): 885.

Search Results

Modify Results

This search

Preprint Server

Current Issue

In This Issue

Citation format:
Results / page:
Results order: