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Method: Mapping nucleosome positions using DNase-seq
- Jianling Zhong,
- Kaixuan Luo,
- Peter S. Winter,
- Gregory E. Crawford,
- Edwin S. Iversen,
- and Alexander J. Hartemink
Genome Res. March 2016 26: 351-364; Published in Advance January 15, 2016, doi:10.1101/gr.195602.115
...). Figure 5A also compares DARNS from Winter et al. (2013) with nucleosomes identified from DNase-seq and MNase-seq. DARNS are regions over which nucleosomes maintain their rotational positioning, and by design, usually represent only part of a nucleosome (Supplemental Fig. 8 shows the length distribution...
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Method: Structured nucleosome fingerprints enable high-resolution mapping of chromatin architecture within regulatory regions
- Alicia N. Schep,
- Jason D. Buenrostro,
- Sarah K. Denny,
- Katja Schwartz,
- Gavin Sherlock,
- and William J. Greenleaf
Genome Res. November 2015 25: 1757-1770; Published in Advance August 27, 2015, doi:10.1101/gr.192294.115
...structured around nucleosomes. (A) ATAC-seq (green) insertion track for S. cerevisiae shows enrichment of insertions at accessible chromatin regions, similar to DNase-seq cut density (orange). Both tracks were smoothed by 150 bp and scaled so that the maximum density in the region is 1. (B) Fragment...
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