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LETTER: Natural selection on gene function drives the evolution of LTR retrotransposon families in the rice genome
- Regina S. Baucom,
- James C. Estill,
- Jim Leebens-Mack,
- and Jeffrey L. Bennetzen
Genome Res. February 2009 19: 243-254; Published in Advance November 24, 2008, doi:10.1101/gr.083360.108
..., Bonferroni-corrected) correlation between the proportion of individuals with stop codons and the average insertion date, except with the reverse transcriptase gene of the copia superfamily ( Fig. 3B ). This generally positive correlation suggests that older LTR retrotransposon families are inactive due...
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Research: Evolutionary rewiring of the wheat transcriptional regulatory network by lineage-specific transposable elements
- Yuyun Zhang,
- Zijuan Li,
- Yu'e Zhang,
- Kande Lin,
- Yuan Peng,
- Luhuan Ye,
- Yili Zhuang,
- Meiyue Wang,
- Yilin Xie,
- Jingyu Guo,
- Wan Teng,
- Yiping Tong,
- Wenli Zhang,
- Yongbiao Xue,
- Zhaobo Lang,
- and Yijing Zhang
Genome Res. December 2021 31: 2276-2289; Published in Advance September 9, 2021, doi:10.1101/gr.275658.121
...lineage-specific and embedded in TEsA comparison of the -wide TF binding patterns revealed that they are largely grouped by TF families (Fig. 3A). Different groups are preferentially localized to different chromosomal regions. The AP2 TFs mostly bind to the distal end of chromosomes, whereas NAC TFs bind...

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