Searching journal content for articles similar to Wessels et al. 26 (7): 1000.

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  1. Research: Dynamic RNA–protein interactions underlie the zebrafish maternal-to-zygotic transition
    • Vladimir Despic,
    • Mario Dejung,
    • Mengting Gu,
    • Jayanth Krishnan,
    • Jing Zhang,
    • Lydia Herzel,
    • Korinna Straube,
    • Mark B. Gerstein,
    • Falk Butter,
    • and Karla M. Neugebauer
    Genome Res. July 2017 27: 1184-1194; Published in Advance April 5, 2017, doi:10.1101/gr.215954.116
    ...crosslinking and immunoprecipitation (iCLIP) (König et al. 2010) was also established in zebrafish embryos. Follow-up experiments reveal unique roles and dynamic activities of Hnrnpa1 in regulation of RNA metabolism during embryogenesis. Results Identification of the zebrafish embryonic mRNA-bound proteome...
  2. Research: Genome wide analysis of 3′ UTR sequence elements and proteins regulating mRNA stability during maternal-to-zygotic transition in zebrafish
    • Charles E. Vejnar,
    • Mario Abdel Messih,
    • Carter M. Takacs,
    • Valeria Yartseva,
    • Panos Oikonomou,
    • Romain Christiano,
    • Marlon Stoeckius,
    • Stephanie Lau,
    • Miler T. Lee,
    • Jean-Denis Beaudoin,
    • Damir Musaev,
    • Hiba Darwich-Codore,
    • Tobias C. Walther,
    • Saeed Tavazoie,
    • Daniel Cifuentes,
    • and Antonio J. Giraldez
    Genome Res. July 2019 29: 1100-1114; Published in Advance June 21, 2019, doi:10.1101/gr.245159.118
    ...regulate the dynamics of mRNA stability during MZT (Yartseva and Giraldez 2015). To identify which pathways regulate each mRNA, we analyzed transcript levels during the first 8 h postfertilization (hpf), at 30- to 60-min intervals in wild-type zebrafish embryos using mRNA-seq (Supplemental Table S1). We...
  3. Research: DDX54 regulates transcriptome dynamics during DNA damage response
    • Miha Milek,
    • Koshi Imami,
    • Neelanjan Mukherjee,
    • Francesca De Bortoli,
    • Ulrike Zinnall,
    • Orsalia Hazapis,
    • Christian Trahan,
    • Marlene Oeffinger,
    • Florian Heyd,
    • Uwe Ohler,
    • Matthias Selbach,
    • and Markus Landthaler
    Genome Res. August 2017 27: 1344-1359; Published in Advance June 8, 2017, doi:10.1101/gr.218438.116
    ...in phosphorylation of histone variant H2AFX (γ-H2AFX), a hallmark of DSB formation (Fig. 1B; Supplemental Fig. S1B), and was not affected by the presence of 4sU and/or UV exposure. We thus used these conditions further for the quantification of the mRNA-bound proteome. For a better comparisonbetween IR...
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