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METHODS: The Human Adult Skeletal Muscle Transcriptional Profile Reconstructed by a Novel Computational Approach
- Stefania Bortoluzzi,
- Fabio d'Alessi,
- Chiara Romualdi,
- and Gian Antonio Danieli
Genome Res. March 1, 2000 10: 344-349; doi:10.1101/gr.10.3.344
...for uncovering the molecular basis of cancer. Nat. Genet. 15: 415-416. Velculescu, V.E., L. Zhang, B. Vogelstein, and K.W. Kinzler. 1995. Serial analysis of gene expression. Science 270: 484–487. Welle, S., K. Bhatt, and C.A. Thornton. 1999. Inventory of high-abundance mRNAs in skeletal muscle of normal men...
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RESOURCE: BodyMap: A Collection of 3′ ESTs for Analysis of Human Gene Expression Information
- Shoko Kawamoto,
- Junji Yoshii,
- Katsuya Mizuno,
- Kouichi Ito,
- Yasuhide Miyamoto,
- Tadashi Ohnishi,
- Ryo Matoba,
- Naohiro Hori,
- Yuhiko Matsumoto,
- Toshiyuki Okumura,
- Yuko Nakao,
- Hisae Yoshii,
- Junko Arimoto,
- Hiroko Ohashi,
- Hiroko Nakanishi,
- Ikko Ohno,
- Jun Hashimoto,
- Kota Shimizu,
- Kazuhisa Maeda,
- Hiroshi Kuriyama,
- Koji Nishida,
- Akiyo Shimizu-Matsumoto,
- Wakako Adachi,
- Reiko Ito,
- Satoshi Kawasaki,
- K.S. Chae,
- Katsuji Murakawa,
- Masahiro Yokoyama,
- Atsushi Fukushima,
- Teruyoshi Hishiki,
- Akihiko Nakaya,
- Jun Sese,
- Norikazu Monma,
- Hitoshi Nikaido,
- Shinichi Morishita,
- Kenichi Matsubara,
- and Kousaku Okubo
Genome Res. November 1, 2000 10: 1817-1827; doi:10.1101/gr.151500
....W. ( 1995 ) Serial analysis of gene expression. Science 270 : 484 – 487 . ↵ Welle S. , Bhatt K. , Thornton C.A. ( 1999 ) Inventory of high-abundance mRNAs in skeletal muscle of normal men. Genome Res. 9 : 506 – 513 . ↵ Wickens M. , Stephenson P. ( 1984 ) Role of the conserved AAUAAA sequence: Four AAUAAA...
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LETTER: Large Functional Range of Steady-State Levels of Nuclear and Mitochondrial Transcripts Coding for the Subunits of the Human Mitochondrial OXPHOS System
- Hervé Duborjal,
- Réjane Beugnot,
- Bénédicte Mousson de Camaret,
- and Jean-Paul Issartel
Genome Res. December 1, 2002 12: 1901-1909; doi:10.1101/gr.194102
...of mitochondrial DNA (mtDNA) copies in a cell. Intrinsically, modification of the number of mtDNA copies in a cell could allow concomitant variation in cellular concentration of mitochondrial mRNAs ( Williams 1986 ; Kaufmann et al. 1996 ). However, this mechanism has not been supported by other data that indicate...
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ARTICLE: Pattern of Organization of Human Mitochondrial Pseudogenes in the Nuclear Genome
- Markus Woischnik and
- Carlos T. Moraes
Genome Res. June 1, 2002 12: 885-893; Published in Advance May 16, 2002, doi:10.1101/gr.227202
...of the human . Science 291 : 1304 – 1351 . ↵ Welle S. , Bhatt K. , Thornton C.A. ( 1999 ) Inventory of high-abundance mRNAs in skeletal muscle of normal men. Genome Res. 9 : 506 – 513 . Pattern of Organization of Human Mitochondrial Pseudogenes in the Nuclear Genome Markus Woischnik and Carlos T. Moraes 1...
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RESOURCE: Transcript Mapping and Genome Annotation of Ascidian mtDNA Using EST Data
- Carmela Gissi and
- Graziano Pesole
Genome Res. September 2003 13: 2203-2212; Published in Advance January 1, 2003, doi:10.1101/gr.1227803
...levels. Moreover, ESTs may derive from unspliced immature mRNAs, alternative splicing and polyadenylation sites, cloning artifacts (chimerisms), and mitochondrial (mt) transcripts. Depending on tissue source and RNA extraction/fractioning methods, a remarkably high fraction of ESTs from a given c...
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METHODS: Genomic Signature Tags (GSTs): A System for Profiling Genomic DNA
- John J. Dunn,
- Sean R. McCorkle,
- Laura A. Praissman,
- Geoffrey Hind,
- Daniel van der Lelie,
- Wadie F. Bahou,
- Dmitri V. Gnatenko,
- and Maureen K. Krause
Genome Res. November 1, 2002 12: 1756-1765; doi:10.1101/gr.306102
...may cause underestimation of the actual frequency for some abundant mRNA species in highly specialized tissues, as was recently demonstrated in a SAGE study of human skeletal muscle ( Welle et al. 1999 ). However, it remains to be seen whether a combined GST long SAGE–based approach that relies...
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METHODS: In Silico Cloning of Novel Endothelial-Specific Genes
- Lukasz Huminiecki and
- Roy Bicknell
Genome Res. November 1, 2000 10: 1796-1806; doi:10.1101/gr.150700
....A. , Marchuk D.A. , Warman M.L. , Cantley L.C. , et al. ( 1996 ) Vascular dysmorphogenesis caused by an activating mutation in the receptor tyrosine kinase TIE2. Cell 87 : 1181 – 1190 . ↵ Welle S. , Bhatt K. , Thornton C.A. ( 1999 ) Inventory of high-abundance mRNAs in skeletal muscle of normal men. Genome Res...
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LETTER: The Mouse Brain Transcriptome by SAGE: Differences in Gene Expression between P30 Brains of the Partial Trisomy 16 Mouse Model of Down Syndrome (Ts65Dn) and Normals
- Roman Chrast,
- Hamish S. Scott,
- Marie Pierre Papasavvas,
- Colette Rossier,
- Emmanuel S. Antonarakis,
- Christine Barras,
- Muriel T. Davisson,
- Cecilia Schmidt,
- Xavier Estivill,
- Mara Dierssen,
- Melanie Pritchard,
- and Stylianos E. Antonarakis
Genome Res. December 1, 2000 10: 2006-2021; doi:10.1101/gr.158500
...in human fibroblasts. Am. J. Hum. Genet. 31 : 478 – 488 . ↵ Welle S. , Bhatt K. , Thornton C.A. ( 1999 ) Inventory of high-abundance mRNAs in skeletal muscle of normal men. Genome Res. 9 : 506 – 513 . ↵ Whatley S.A. , Hall C. , Davison A.N. , Lim L. ( 1984 ) Alterations in the relative amounts of specific...

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