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Resource: A spatiotemporally resolved atlas of mRNA decay in the C. elegans embryo reveals differential regulation of mRNA stability across stages and cell types
- Felicia Peng,
- C. Erik Nordgren,
- and John Isaac Murray
Genome Res. August 2024 34: 1235-1252; Published in Advance August 14, 2024, doi:10.1101/gr.278980.124
...Felicia Peng1, C. Erik Nordgren2 and John Isaac Murray1 1Department of Genetics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA; 2Department of Biology, School of Arts and Sciences, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA...
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PERSPECTIVE: Genomics in C. elegans: So many genes, such a little worm
- LaDeana W. Hillier,
- Alan Coulson,
- John I. Murray,
- Zhirong Bao,
- John E. Sulston,
- and Robert H. Waterston
Genome Res. December 2005 15: 1651-1660; doi:10.1101/gr.3729105
...Genomics in C. elegans : So many genes, such a little worm LaDeana W. Hillier 1 , Alan Coulson 2 , 3 , John I. Murray 4 , Zhirong Bao 4 , John E. Sulston 3 , and Robert H. Waterston 4 , 5 1 Genome Sequencing...
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GENOME METHODS: Short-Insert Libraries as a Method of Problem Solving in Genome Sequencing
- Amanda A. McMurray,
- John E. Sulston,
- and Michael A. Quail
Genome Res. May 1, 1998 8: 562-566; doi:10.1101/gr.8.5.562
...Short-Insert Libraries as a Method of Problem Solving in Genome Sequencing Amanda A. McMurray , John E. Sulston 1 , and Michael A. Quail The Sanger Centre, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire CB10 1SA, UK Abstract...
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Resource: GenomeMUSter mouse genetic variation service enables multitrait, multipopulation data integration and analysis
- Robyn L. Ball,
- Molly A. Bogue,
- Hongping Liang,
- Anuj Srivastava,
- David G. Ashbrook,
- Anna Lamoureux,
- Matthew W. Gerring,
- Alexander S. Hatoum,
- Matthew J. Kim,
- Hao He,
- Jake Emerson,
- Alexander K. Berger,
- David O. Walton,
- Keith Sheppard,
- Baha El Kassaby,
- Francisco Castellanos,
- Govindarajan Kunde-Ramamoorthy,
- Lu Lu,
- John Bluis,
- Sejal Desai,
- Beth A. Sundberg,
- Gary Peltz,
- Zhuoqing Fang,
- Gary A. Churchill,
- Robert W. Williams,
- Arpana Agrawal,
- Carol J. Bult,
- Vivek M. Philip,
- and Elissa J. Chesler
Genome Res. January 2024 34: 145-159; Published in Advance January 30, 2024, doi:10.1101/gr.278157.123
..., Govindarajan Kunde-Ramamoorthy1, Lu Lu3, John Bluis1, Sejal Desai1, Beth A. Sundberg1, Gary Peltz7, Zhuoqing Fang7, Gary A. Churchill1, Robert W. Williams3, Arpana Agrawal8, Carol J. Bult1, Vivek M. Philip1 and Elissa J. Chesler1 1The Jackson Laboratory, Bar Harbor, Maine 04609, USA; 2The Jackson Laboratory...
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Resource: The full-length transcriptome of C. elegans using direct RNA sequencing
- Nathan P. Roach,
- Norah Sadowski,
- Amelia F. Alessi,
- Winston Timp,
- James Taylor,
- and John K. Kim
Genome Res. February 2020 30: 299-312; Published in Advance February 5, 2020, doi:10.1101/gr.251314.119
...Nathan P. Roach1, Norah Sadowski2, Amelia F. Alessi1, Winston Timp2, James Taylor1,3 and John K. Kim1 1Department of Biology, Johns Hopkins University, Baltimore, Maryland 21218, USA; 2Department of Biomedical Engineering, Department of Molecular Biology and Genetics, Johns Hopkins University...
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Method: MinION-based long-read sequencing and assembly extends the Caenorhabditis elegans reference genome
- John R. Tyson,
- Nigel J. O'Neil,
- Miten Jain,
- Hugh E. Olsen,
- Philip Hieter,
- and Terrance P. Snutch
Genome Res. February 2018 28: 266-274; Published in Advance December 22, 2017, doi:10.1101/gr.221184.117
...MinION-based long-read sequencing and assembly extends the Caenorhabditis elegans reference John R. Tyson1,5, Nigel J. O'Neil2,5, Miten Jain3,5, Hugh E. Olsen3, Philip Hieter2,4 and Terrance P. Snutch1 1Michael Smith Laboratories and Djavad Mowafaghian Centre for Brain Health, University of British...
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In memoriam: Sydney Brenner—a personal perspective
- Byrappa Venkatesh
Genome Res. June 2019 29: vii-ix; doi:10.1101/gr.251918.119
...-generation sequencing by inventing the microbead array-based DNA sequencing technology (Brenner et al. 2000a,b). In 2002, Sydney together with John Sulston and Robert Horvitz was awarded the Nobel Prize in Physiology or Medicine for deciphering the genetic regulation of animal development and programmed cell death...
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Research: Multidimensional regulation of gene expression in the C. elegans embryo
- John Isaac Murray,
- Thomas J. Boyle,
- Elicia Preston,
- Dionne Vafeados,
- Barbara Mericle,
- Peter Weisdepp,
- Zhongying Zhao,
- Zhirong Bao,
- Max Boeck,
- and Robert H. Waterston
Genome Res. July 2012 22: 1282-1294; Published in Advance April 16, 2012, doi:10.1101/gr.131920.111
...Multidimensional regulation of gene expression in the C. elegans embryo John Isaac Murray 1 , 2 , Thomas J. Boyle 1 , Elicia Preston 1 , 2 , Dionne Vafeados 1 , Barbara Mericle 1 , Peter Weisdepp 1 , Zhongying Zhao 1...
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Research: C. elegans whole-genome sequencing reveals mutational signatures related to carcinogens and DNA repair deficiency
- Bettina Meier,
- Susanna L. Cooke,
- Joerg Weiss,
- Aymeric P. Bailly,
- Ludmil B. Alexandrov,
- John Marshall,
- Keiran Raine,
- Mark Maddison,
- Elizabeth Anderson,
- Michael R. Stratton,
- Anton Gartner,
- and Peter J. Campbell
Genome Res. October 2014 24: 1624-1636; Published in Advance July 16, 2014, doi:10.1101/gr.175547.114
...2 , John Marshall 2 , Keiran Raine 2 , Mark Maddison 2 , Elizabeth Anderson 2 , Michael R. Stratton 2 , Anton Gartner 1 , 6 and Peter J. Campbell 2 , 4 , 5 , 6 1 Centre for Gene...
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In memoriam: Frederick Sanger (1918–2013)
- Bruce A. Roe
Genome Res. April 2014 24: xi-xii
...and Alanmoved to the Sanger Institute where Bart established the highly productive microbial sequencing group and where Alan worked with John Sulston sequencing C. elegans and C. briggsae as well as a number of human chromosomes and the mouse . Jacques Drouin, who, as mentioned, originally cloned fragments...
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