Searching journal content for articles similar to Wang et al. 9 (11): 1059.

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  1. Method: High-resolution spatial transcriptomics in fixed tissue using a cost-effective PCL-seq workflow
    • Xue Dong,
    • Mengzhu Hu,
    • Xiaonan Cui,
    • Wenjian Zhou,
    • Jingtao Cai,
    • Guangyao Mao,
    • and Weiyang Shi
    Genome Res. September 2025 35: 2052-2063; Published in Advance August 5, 2025, doi:10.1101/gr.279906.124
    ...; (2) illuminated NIH/3T3 regions; and (3) non-photocleaved regions (control). Sequencing reads were mapped to a combined human and mouse reference to quantify the proportion of genic reads from each species. Libraries generated from the control (nonilluminated) regions yielded negligible sequencing...
  2. Research: Sir3 mediates long-range chromosome interactions in budding yeast
    • Myriam Ruault,
    • Vittore F. Scolari,
    • Luciana Lazar-Stefanita,
    • Antoine Hocher,
    • Isabelle Loïodice,
    • Romain Koszul,
    • and Angela Taddei
    Genome Res. March 2021 31: 411-425; Published in Advance February 12, 2021, doi:10.1101/gr.267872.120
    ...of the silencing factor Sir3 on the regulation of the yeast 3D folding. We show that Sir3 is both necessary and limiting for telomere clustering.Sir3 mediates interactions between telomeresHi-C contact maps clearly show that interactions between subtelomeric regions decrease in the absence of Sir3 and increase...
  3. Research: Chromosome-scale assemblies of Acanthamoeba castellanii genomes provide insights into Legionella pneumophila infection–related chromatin reorganization
    • Cyril Matthey-Doret,
    • Morgan J. Colp,
    • Pedro Escoll,
    • Agnès Thierry,
    • Pierrick Moreau,
    • Bruce Curtis,
    • Tobias Sahr,
    • Matt Sarrasin,
    • Michael W. Gray,
    • B. Franz Lang,
    • John M. Archibald,
    • Carmen Buchrieser,
    • and Romain Koszul
    Genome Res. September 2022 32: 1698-1710; Published in Advance September 15, 2022, doi:10.1101/gr.276375.121
    ...-C contact maps have been published from species of Amoebozoa. Although a Hi-C library was generated on Entamoeba histolytica for the purpose of scaffolding (Kawano-Sugaya et al. 2020), its quality was too poor to yield a contact map of good quality. Here, the Hi-C reads we used to generate the chromosome...
  4. LETTER: A High-Resolution HAPPY Map of Dictyostelium discoideum Chromosome 6
    • Bernard A. Konfortov,
    • Helen M. Cohen,
    • Alan T. Bankier,
    • and Paul H. Dear
    Genome Res. November 1, 2000 10: 1737-1742; doi:10.1101/gr.141700
    ...mapping: Linkage mapping using a physical analogue of meiosis. Nucleic Acids Res. 21 : 13 – 20 . ↵ Dear P.H. , Bankier A.T. , Piper M.B. ( 1998 ) A high-resolution metric HAPPY map of human chromosome 14. Genomics 48 : 232 – 241 . ↵ Firtel R.A. , Bonner J. ( 1972 ) Characterization of the of the cellular...
  5. Research: Intragenic repeat expansion in the cell wall protein gene HPF1 controls yeast chronological aging
    • Benjamin P. Barré,
    • Johan Hallin,
    • Jia-Xing Yue,
    • Karl Persson,
    • Ekaterina Mikhalev,
    • Agurtzane Irizar,
    • Sylvester Holt,
    • Dawn Thompson,
    • Mikael Molin,
    • Jonas Warringer,
    • and Gianni Liti
    Genome Res. May 2020 30: 697-710; Published in Advance April 10, 2020, doi:10.1101/gr.253351.119
    ...has prevented more exhaustive exploration. Here, we leveraged a highly recombined S. cerevisiae population derived from natural isolates with the aim to map genetic variants controlling yeast chronological life span. We generated a thousand unique diploid individuals and monitored their longevity...
    OPEN ACCESS ARTICLE
  6. METHODS: High-Resolution BAC-Based Map of the Central Portion of Mouse Chromosome 5
    • Jonathan Crabtree,
    • Tim Wiltshire,
    • Brian Brunk,
    • Shaying Zhao,
    • Jonathan Schug,
    • Christian J. Stoeckert, Jr.,
    • and Maja Bucan
    Genome Res. October 1, 2001 11: 1746-1757; doi:10.1101/gr.195101
    ...5Buc4 ) derived from yeast artificial chromosome (YAC)-end clones ( Nagle et al. 1994 , 1995 ; Brunkow et al. 1995 ) (Table 2, available as supplementary material at http://www..org ). Based on the previously reported PFGE map ( Nagle et al. 1995 ) we estimate that this region covers 5 Mb. The mouse...
  7. ARTICLE: A high-fidelity physical map of human chromosome 21q in yeast artificial chromosomes.
    • J R Korenberg,
    • X N Chen,
    • S Mitchell,
    • S Fannin,
    • S Gerwehr,
    • D Cohen,
    • and I Chumakov
    Genome Res. December 1995 5: 427-443; doi:10.1101/gr.5.5.427
    ...A high-fidelity physical map of human chromosome 21q in yeast artificial chromosomes. J R Korenberg , X N Chen , S Mitchell , S Fannin , S Gerwehr , D Cohen , and I Chumakov Ahmanson Department of Pediatrics...
  8. LETTER: High-Resolution Physical Map and Transcript Identification of a Prostate Cancer Deletion Interval on 8p22
    • Zarema H. Arbieva,
    • Kumarika Banerjee,
    • Su Young Kim,
    • Seby L. Edassery,
    • Vasilios S. Maniatis,
    • Stephen K. Horrigan,
    • and Carol A. Westbrook
    Genome Res. February 1, 2000 10: 244-257; doi:10.1101/gr.10.2.244
    ...in breast cancer progression. Am. J. Pathol. 15 : 815 – 819 . ↵ Bookstein R. , Levy A. , MacGrogan D. , Lewis T.B. , Weissenbach J. , O'Connell P. , Leach R.J. ( 1994 ) Yeast artificial chromosome and radiation hybrid map of loci in chromosome band 8p22, a common region of allelic loss in multiple human...
  9. LETTER: High-Resolution Transcript Map of the Region Spanning D12S1629 and D12S312 at Chromosome 12q13: Triple A Syndrome-Linked Region
    • Hyoungnam Lee,
    • Eunkyung Choi,
    • Young Seomun,
    • K. Montgomery,
    • A. Huebner,
    • Eunice Lee,
    • Stephanie Lau,
    • Choun-Ki Joo,
    • R. Kucherlapati,
    • and Sung-Joo Kim Yoon
    Genome Res. October 1, 2000 10: 1561-1567; doi:10.1101/gr.142100
    ...markers is not clearly known and radiation hybrids cannot readily provide DNA inserts to isolate genes. The way to overcome this limitation is to develop a physical map based on overlapping cloned fragments of human DNA. Although there is a yeast artificial chromosome (YAC)-based clone contig map...
  10. Methods: Efficient high-resolution deletion discovery in Caenorhabditis elegans by array comparative genomic hybridization
    • Jason S. Maydan,
    • Stephane Flibotte,
    • Mark L. Edgley,
    • Joanne Lau,
    • Rebecca R. Selzer,
    • Todd A. Richmond,
    • Nathan J. Pofahl,
    • James H. Thomas,
    • and Donald G. Moerman
    Genome Res. March 2007 17: 337-347; Published in Advance January 31, 2007, doi:10.1101/gr.5690307
    ...an oligonucleotide-based approach with a high-density array format (∼385,000 unique probes) is already leading to widespread adoption of this method for high-resolution mapping of DNA breakpoints for larger sized chromosomal rearrangements in tumors and microdeletion syndromes in humans ( Pollack et al. 2002...
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