Searching journal content for articles similar to Wang et al. 36 (1): 214.

Displaying results 1-10 of 87

For checked items

view abstracts
download to citation manager

Select this article
Resource: Comprehensive identification of genomic and environmental determinants of phenotypic plasticity in maize
- Laura E. Tibbs-Cortes,
- Tingting Guo,
- Carson M. Andorf,
- Xianran Li,
- and Jianming Yu
Genome Res. August 2024 34: 1253-1263; Published in Advance September 13, 2024, doi:10.1101/gr.279027.124
...underlying phenotypic plasticity in a wide variety of traits and depositing our results as a track on the MaizeGDB browser, we provide a community resource as well as a comprehensive analytical framework to facilitate continuing complex trait dissection and prediction in maize and other crops. Our findings...
OPEN ACCESS ARTICLE
Select this article
Research: Differences in activity and stability drive transposable element variation in tropical and temperate maize
- Shujun Ou,
- Armin Scheben,
- Tyler Collins,
- Yinjie Qiu,
- Arun S. Seetharam,
- Claire C. Menard,
- Nancy Manchanda,
- Jonathan I. Gent,
- Michael C. Schatz,
- Sarah N. Anderson,
- Matthew B. Hufford,
- and Candice N. Hirsch
Genome Res. August 2024 34: 1140-1153; Published in Advance September 9, 2024, doi:10.1101/gr.278131.123
...TE insertions and the substantial impact that a handful of TE insertions can have on phenotype (Butelli et al. 2012; Yokosho et al. 2016; Dong et al. 2019).panEDTA allowed, for the first time, access to high-quality pan TE annotations in maize, as well as characterization of the previously...
Select this article
Research: Genomic analyses of wild argali, domestic sheep, and their hybrids provide insights into chromosome evolution, phenotypic variation, and germplasm innovation
- Xin Li,
- San-Gang He,
- Wen-Rong Li,
- Ling-Yun Luo,
- Ze Yan,
- Dong-Xin Mo,
- Xing Wan,
- Feng-Hua Lv,
- Ji Yang,
- Ya-Xi Xu,
- Juan Deng,
- Qiang-Hui Zhu,
- Xing-Long Xie,
- Song-Song Xu,
- Chen-Xi Liu,
- Xin-Rong Peng,
- Bin Han,
- Zhong-Hui Li,
- Lei Chen,
- Jian-Lin Han,
- Xue-Zhi Ding,
- Renqing Dingkao,
- Yue-Feng Chu,
- Jin-Yan Wu,
- Li-Min Wang,
- Ping Zhou,
- Ming-Jun Liu,
- and Meng-Hua Li
Genome Res. September 2022 32: 1669-1684; Published in Advance August 10, 2022, doi:10.1101/gr.276769.122
...with varied number of vertebrae and validated the causal mutation by whole- association analysis. We verified its function using CRISPR-Cas9 editing. Our results provide insights into chromosomal speciation and phenotypic evolution and a foundation of genetic variants for the breeding of sheep and other...
OPEN ACCESS ARTICLE
Select this article
Research: miRNA-like secondary structures in maize (Zea mays) genes and transposable elements correlate with small RNAs, methylation, and expression
- Galen T. Martin,
- Edwin Solares,
- Jeanelle Guadardo-Mendez,
- Aline Muyle,
- Alexandros Bousios,
- and Brandon S. Gaut
Genome Res. November 2023 33: 1932-1946; Published in Advance November 2, 2023, doi:10.1101/gr.277459.122
...for Dicer-like mechanisms.After performing computational annotation to predict miRNA-like regions in the genes and TEs of maize, we investigate the relationship between these regions to smRNAs, methylation levels, chromatin accessibility, and, where applicable, gene expression (Supplemental Fig. S1...
OPEN ACCESS ARTICLE
Select this article
Research: Dynamic effects of interacting genes underlying rice flowering-time phenotypic plasticity and global adaptation
- Tingting Guo,
- Qi Mu,
- Jinyu Wang,
- Adam E. Vanous,
- Akio Onogi,
- Hiroyoshi Iwata,
- Xianran Li,
- and Jianming Yu
Genome Res. May 2020 30: 673-683; Published in Advance April 16, 2020, doi:10.1101/gr.255703.119
...2013).Although natural variants of these genes were associated with flowering time in diverse rice accessions (Zhao et al. 2011; Huang et al. 2012b; Yano et al. 2016), integration of these findings to explain and predict complex phenotypic plasticity observed in natural fields has received limited...
Select this article
Resource: The pig pangenome provides insights into the roles of coding structural variations in genetic diversity and adaptation
- Zhengcao Li,
- Xiaohong Liu,
- Chen Wang,
- Zhenyang Li,
- Bo Jiang,
- Ruifeng Zhang,
- Lu Tong,
- Youping Qu,
- Sheng He,
- Haifan Chen,
- Yafei Mao,
- Qingnan Li,
- Torsten Pook,
- Yu Wu,
- Yanjun Zan,
- Hui Zhang,
- Lu Li,
- Keying Wen,
- and Yaosheng Chen
Genome Res. October 2023 33: 1833-1847; Published in Advance November 1, 2023, doi:10.1101/gr.277638.122
...The pig pan provides insights into the roles of coding structural variations in genetic diversity and adaptation Zhengcao Li1, Xiaohong Liu1, Chen Wang1, Zhenyang Li1, Bo Jiang1, Ruifeng Zhang1, Lu Tong1, Youping Qu1, Sheng He1, Haifan Chen1, Yafei Mao2, Qingnan Li1, Torsten Pook3, Yu Wu1, Yanjun...
OPEN ACCESS ARTICLE
Select this article
Research: A systems genetics approach reveals environment-dependent associations between SNPs, protein coexpression, and drought-related traits in maize
- Mélisande Blein-Nicolas,
- Sandra Sylvia Negro,
- Thierry Balliau,
- Claude Welcker,
- Llorenç Cabrera-Bosquet,
- Stéphane Dimitri Nicolas,
- Alain Charcosset,
- and Michel Zivy
Genome Res. November 2020 30: 1593-1604; Published in Advance October 15, 2020, doi:10.1101/gr.255224.119
...makes the design of new drought-tolerant varieties a difficult task that would greatly benefit from a better understanding of the genotype–phenotype relationship. To provide novel insight into this relationship, we applied a systems genetics approach integrating high-throughput phenotypic, proteomic...
Select this article
Research: Genomic analyses provide insights into peach local adaptation and responses to climate change
- Yong Li,
- Ke Cao,
- Nan Li,
- Gengrui Zhu,
- Weichao Fang,
- Changwen Chen,
- Xinwei Wang,
- Jian Guo,
- Qi Wang,
- Tiyu Ding,
- Jiao Wang,
- Liping Guan,
- Junxiu Wang,
- Kuozhan Liu,
- Wenwu Guo,
- Pere Arús,
- Sanwen Huang,
- Zhangjun Fei,
- and Lirong Wang
Genome Res. April 2021 31: 592-606; Published in Advance March 9, 2021, doi:10.1101/gr.261032.120
...) was mainly present in groups from low altitudes (ST and YG groups) and the wild group (TB group) (Fig. 6F,G), consistent with their phenotypes. This also provides insights into two distinct evolutionary routes of BD and CR in low- and high chill regions. Moreover, a previous study reported...
OPEN ACCESS ARTICLE
Select this article
Resource: A comparative transcriptional landscape of maize and sorghum obtained by single-molecule sequencing
- Bo Wang,
- Michael Regulski,
- Elizabeth Tseng,
- Andrew Olson,
- Sara Goodwin,
- W. Richard McCombie,
- and Doreen Ware
Genome Res. June 2018 28: 921-932; Published in Advance April 30, 2018, doi:10.1101/gr.227462.117
...are evolutionary changes in AS or gene expression required to establish major differences in morphological and phenotypic characteristics? Changeswith small effects atmultiple loci probably underlie many species-specific differences, but individual differences in the expression of genes involved in developmental...
OPEN ACCESS ARTICLE
Select this article
Research: Regulatory modules controlling maize inflorescence architecture
- Andrea L. Eveland,
- Alexander Goldshmidt,
- Michael Pautler,
- Kengo Morohashi,
- Christophe Liseron-Monfils,
- Michael W. Lewis,
- Sunita Kumari,
- Susumu Hiraga,
- Fang Yang,
- Erica Unger-Wallace,
- Andrew Olson,
- Sarah Hake,
- Erik Vollbrecht,
- Erich Grotewold,
- Doreen Ware,
- and David Jackson
Genome Res. March 2014 24: 431-443; Published in Advance December 4, 2013, doi:10.1101/gr.166397.113
...cereal and bioenergy crops (Vollbrecht et al. 2005; Doust 2007). While classical genetics has uncovered regulators of maize inflorescence architecture (Vollbrecht and Schmidt 2009), the molecular mechanisms and gene regulatory networks underlying this grass-specific morphology remain elusive. Branching...

For checked items

view abstracts
download to citation manager

Searching journal content for articles similar to Wang et al. 36 (1): 214.

Search Results

Modify Results

This search

Preprint Server

Current Issue

In This Issue

Citation format:
Results / page:
Results order: