Searching journal content for articles similar to Wang et al. 29 (2): 193.

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  1. Research: A dynamic H3K27ac signature identifies VEGFA-stimulated endothelial enhancers and requires EP300 activity
    • Bing Zhang,
    • Daniel S. Day,
    • Joshua W. Ho,
    • Lingyun Song,
    • Jingjing Cao,
    • Danos Christodoulou,
    • Jonathan G. Seidman,
    • Gregory E. Crawford,
    • Peter J. Park,
    • and William T. Pu
    Genome Res. June 2013 23: 917-927; Published in Advance April 1, 2013, doi:10.1101/gr.149674.112
    ...expression. These regions with dynamic H3K27ac exhibited VEGFA-stimulated transcriptional activity in both luciferase assays and in HUVEC gene expression profiles, and EP300 inhibition blockedVEGFA-induced changes inH3K27ac and gene expression. Thus, our study indicates that the epi is an integral...
  2. Method: Spatial Cellular Networks from omics data with SpaCeNet
    • Stefan Schrod,
    • Niklas Lück,
    • Robert Lohmayer,
    • Stefan Solbrig,
    • Dennis Völkl,
    • Tina Wipfler,
    • Katherine H. Shutta,
    • Marouen Ben Guebila,
    • Andreas Schäfer,
    • Tim Beißbarth,
    • Helena U. Zacharias,
    • Peter J. Oefner,
    • John Quackenbush,
    • and Michael Altenbuchinger
    Genome Res. September 2024 34: 1371-1383; Published in Advance September 4, 2024, doi:10.1101/gr.279125.124
    ...with Mbp levels in neighboring cells. A possible interpretation is that cells expressing Flt1 accumulate in the spatial vicinity of cells which lack Mbp. This would be in line with the observation that VEGFA (which is recognized by FLT1) promotes the migration of oligodendrocyte precursor cells (OPCs...
  3. Research: Coordination of zygotic genome activation entry and exit by H3K4me3 and H3K27me3 in porcine early embryos
    • Guowei Bu,
    • Wei Zhu,
    • Xin Liu,
    • Jingjing Zhang,
    • Longtao Yu,
    • Kai Zhou,
    • Shangke Wang,
    • Zhekun Li,
    • Zhengang Fan,
    • Tingting Wang,
    • Taotao Hu,
    • Ruifeng Hu,
    • Zhiting Liu,
    • Tao Wang,
    • Linhui Wu,
    • Xia Zhang,
    • Shuhong Zhao,
    • and Yi-Liang Miao
    Genome Res. August 2022 32: 1487-1501; Published in Advance July 22, 2022, doi:10.1101/gr.276207.121
    ...dynamics during ZGA are highly divergent among species. Thus, it is necessary to investigate the epigenetic reprogramming specificities that are orchestrated with ZGA in different vertebrates.Pig (Sus scrofa domesticus) is widely regarded as an important agricultural resource and alternative model...
  4. Research: Cellular plasticity balances the metabolic and proliferation dynamics of a regenerating liver
    • Ullas V. Chembazhi,
    • Sushant Bangru,
    • Mikel Hernaez,
    • and Auinash Kalsotra
    Genome Res. April 2021 31: 576-591; Published in Advance March 1, 2021, doi:10.1101/gr.267013.120
    ...individual cells by integrating co-expression data with transcription factor motif enrichment analysis, generating a “regulon,” which refers to an expressed transcription factor and all of its co-expressed target genes. We obtained the predicted regulon activities using AUCell, which ranks targets of each...
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