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Corrigendum: Corrigendum: Transcriptome analyses of rhesus monkey preimplantation embryos reveal a reduced capacity for DNA double-strand break repair in primate oocytes and early embryos
- Xinyi Wang,
- Denghui Liu,
- Dajian He,
- Shengbao Suo,
- Xian Xia,
- Xiechao He,
- Jing-Dong J. Han,
- and Ping Zheng
Genome Res. September 2017 27: 1621.2; doi:10.1101/gr.226613.117
...of affiliations. Please note the corrected list above. The affiliation list has already been corrected online. doi: 10.1101/gr.226613.117 10.1101/gr.226613.117 1549-5469 1088-9051 genome;gr.226613.117 Corrigendum: Transcriptome analyses of rhesus monkey preimplantation embryos reveal a reduced capacity for DNA...
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Research: Single-cell sequencing of primate preimplantation embryos reveals chromosome elimination via cellular fragmentation and blastomere exclusion
- Brittany L. Daughtry,
- Jimi L. Rosenkrantz,
- Nathan H. Lazar,
- Suzanne S. Fei,
- Nash Redmayne,
- Kristof A. Torkenczy,
- Andrew Adey,
- Melissa Yan,
- Lina Gao,
- Byung Park,
- Kimberly A. Nevonen,
- Lucia Carbone,
- and Shawn L. Chavez
Genome Res. March 2019 29: 367-382; Published in Advance January 25, 2019, doi:10.1101/gr.239830.118
...fragmentation is conserved between primatesTo determine the aneuploidy and micronucleation frequency in rhesus cleavage-stage embryos, we developed an experimental approach using scDNA-seq and TLM to noninvasively assess preimplantation development (Fig. 1A). Mature metaphase II (MII) oocytes underwent...
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Research: Somatic retrotransposition in the developing rhesus macaque brain
- Victor Billon,
- Francisco J. Sanchez-Luque,
- Jay Rasmussen,
- Gabriela O. Bodea,
- Daniel J. Gerhardt,
- Patricia Gerdes,
- Seth W. Cheetham,
- Stephanie N. Schauer,
- Prabha Ajjikuttira,
- Thomas J. Meyer,
- Cora E. Layman,
- Kimberly A. Nevonen,
- Natasha Jansz,
- Jose L. Garcia-Perez,
- Sandra R. Richardson,
- Adam D. Ewing,
- Lucia Carbone,
- and Geoffrey J. Faulkner
Genome Res. July 2022 32: 1298-1314; Published in Advance June 21, 2022, doi:10.1101/gr.276451.121
...and 5′ truncated to remove almost all of the upstream PRDM4 exons; or (4) DNA methylation does not as strongly underpin macaque L1RS2 transcriptional repression as it does human L1HS repression.L1RSPRDM4 is the first endogenously mobile nonhuman primate L1, to our knowledge, to be tested in a cultured...
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Research: Single-cell RNA-sequencing reveals the existence of naive and primed pluripotency in pre-implantation rhesus monkey embryos
- Denghui Liu,
- Xinyi Wang,
- Dajian He,
- Chunli Sun,
- Xiechao He,
- Lanzhen Yan,
- Yizhou Li,
- Jing-Dong J. Han,
- and Ping Zheng
Genome Res. October 2018 28: 1481-1493; Published in Advance August 28, 2018, doi:10.1101/gr.233437.117
...cells and ICM/EPI cells at the EB stage. A total of 183 and 476 genes were significantly highly expressed in TE and ICM (FDR < 0.05), respectively (Supplemental Fig. S3B; Supplemental Table S7). We noticed that several DNA damage repair pathways were the most enriched GO terms of ICM (Supplemental Table...
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Research: Embryonic LTR retrotransposons supply promoter modules to somatic tissues
- Kosuke Hashimoto,
- Eeva-Mari Jouhilahti,
- Virpi Töhönen,
- Piero Carninci,
- Juha Kere,
- and Shintaro Katayama
Genome Res. November 2021 31: 1983-1993; Published in Advance October 21, 2021, doi:10.1101/gr.275354.121
...liftOver with the “-minMatch=0.5” option. A phylogenetic tree was constructed using the ngphylogeny.fr pipeline with MAFFT alignment, BMGE curation, FastME tree inference, and iTOL visualization (Lemoine et al. 2019).cDNA cloningEmbryos were collected in Sweden (Dnr 2010/937–31/4 of the Regional Ethics...
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Corrigendum: Corrigendum: The evolution of African great ape subtelomeric heterochromatin and the fusion of human chromosome 2
- Mario Ventura,
- Claudia R. Catacchio,
- Saba Sajjadian,
- Laura Vives,
- Peter H. Sudmant,
- Tomas Marques-Bonet,
- Tina A. Graves,
- Richard K. Wilson,
- and Evan E. Eichler
Genome Res. September 2017 27: 1621.1; doi:10.1101/gr.226878.117
...analyses of rhesus monkey preimplantation embryos reveal a reduced capacity for DNA double-strand break repair in primate oocytes and early embryos Xinyi Wang,1,3,4,5,7 Denghui Liu,2,3,7 Dajian He,1,3,4,5 Shengbao Suo,2,3 Xian Xia,2,3 Xiechao He,1,5,6 Jing-Dong J. Han,2 and Ping Zheng1,5,6 1State Key...
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