Searching journal content for articles similar to Wang et al. 26 (10): 1417.

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  1. Research: Functional genomics analysis of developing zebrafish and human endoderm reveals highly conserved cis-regulatory modules acting during vertebrate organogenesis
    • Daniela M Riley,
    • Randa Elsayed,
    • Mark D Walsh,
    • Simaran Johal,
    • Ying Lin,
    • Harry Walton,
    • Till Bretschneider,
    • Sascha Ott,
    • and Andrew C Nelson
    Genome Res. March 4, 2026 gr.280838.125; Published in Advance March 4, 2026, doi:10.1101/gr.280838.125
    ...315 nervous system and pancreas. Overall we conclude that we have identified a compendium of 316 HCNEs likely to control gene expression during early organogenesis across vertebrate 317 evolution. 318 16 319 320 321 Human A HCNEs overlapping humanH3K27ac peaks 922 706 1,418608 252 171 923 AFG PFG MHG...
    ACCEPTED MANUSCRIPT
  2. Resource: dbEmbryo multi-omics database for analyses of synergistic regulation in early mammalian embryo development
    • Xin Huang,
    • Xiaohan Tang,
    • Xuemei Bai,
    • Honglei Li,
    • Huan Tao,
    • Junting Wang,
    • Yaru Li,
    • Yu Sun,
    • Yang Zheng,
    • Xiang Xu,
    • Longteng Wang,
    • Yang Ding,
    • Meisong Lu,
    • Pingkun Zhou,
    • Xiaochen Bo,
    • Hao Li,
    • and Hebing Chen
    Genome Res. August 2022 32: 1612-1625; Published in Advance August 17, 2022, doi:10.1101/gr.276744.122
    ...IP-seq for histone H3 lysine 9 trimethylated (H3K9me3), ChIP-seq for histone H3 at lysine 27 trimethylation (H3K27me3), ChIP-seq for histone H3 lysine 27 acetylation (H3K27ac), and high-throughput chromosome conformation capture [Hi-C]) of human and mouse early embryos can be downloaded on the “data download” page...
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  3. Research: Enhancers and super-enhancers have an equivalent regulatory role in embryonic stem cells through regulation of single or multiple genes
    • Sakthi D. Moorthy,
    • Scott Davidson,
    • Virlana M. Shchuka,
    • Gurdeep Singh,
    • Nakisa Malek-Gilani,
    • Lida Langroudi,
    • Alexandre Martchenko,
    • Vincent So,
    • Neil N. Macpherson,
    • and Jennifer A. Mitchell
    Genome Res. February 2017 27: 246-258; Published in Advance November 28, 2016, doi:10.1101/gr.210930.116
    ...these regions have been identified by increased binding of the mediator protein MED1, enrichment of histone H3 K27 acetylation (H3K27ac), or binding of celltype–specific transcription factors (Khan and Zhang 2016). The super-enhancer prediction involves bioinformatically stitching regions within 12.5 kb of one...
  4. Method: Integrated analysis of motif activity and gene expression changes of transcription factors
    • Jesper Grud Skat Madsen,
    • Alexander Rauch,
    • Elvira Laila Van Hauwaert,
    • Søren Fisker Schmidt,
    • Marc Winnefeld,
    • and Susanne Mandrup
    Genome Res. February 2018 28: 243-255; Published in Advance December 12, 2017, doi:10.1101/gr.227231.117
    ...that IMAGE is a powerful and precise method for prediction of regulators of gene expression.Genome-wide mapping of transcriptional enhancers and assessment of their activity under different conditions constitutes a powerful first step in the analysis of transcriptional networks. The sequence information...
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