Searching journal content for articles similar to Wang et al. 15 (8): 1118.

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  1. Methods: Whole proteome analysis of post-translational modifications: Applications of mass-spectrometry for proteogenomic annotation
    • Nitin Gupta,
    • Stephen Tanner,
    • Navdeep Jaitly,
    • Joshua N. Adkins,
    • Mary Lipton,
    • Robert Edwards,
    • Margaret Romine,
    • Andrei Osterman,
    • Vineet Bafna,
    • Richard D. Smith,
    • and Pavel A. Pevzner
    Genome Res. September 2007 17: 1362-1377; Published in Advance August 9, 2007, doi:10.1101/gr.6427907
    ...Whole proteome analysis of post-translational modifications: Applications of mass-spectrometry for proteogenomic annotation Nitin Gupta 1 , 7 , 8 , Stephen Tanner 1 , 7 , Navdeep Jaitly 2 , Joshua N. Adkins 2 , Mary Lipton 2...
  2. Methods: Comparative proteogenomics: Combining mass spectrometry and comparative genomics to analyze multiple genomes
    • Nitin Gupta,
    • Jamal Benhamida,
    • Vipul Bhargava,
    • Daniel Goodman,
    • Elisabeth Kain,
    • Ian Kerman,
    • Ngan Nguyen,
    • Noah Ollikainen,
    • Jesse Rodriguez,
    • Jian Wang,
    • Mary S. Lipton,
    • Margaret Romine,
    • Vineet Bafna,
    • Richard D. Smith,
    • and Pavel A. Pevzner
    Genome Res. July 2008 18: 1133-1142; Published in Advance April 21, 2008, doi:10.1101/gr.074344.107
    ...spectrometry data from multiple genomes at once. We show that such a comparative proteogenomics approach (like comparative genomics) allows one to address the problems that remained beyond the reach of the traditional “single proteome” approach in mass spectrometry. In particular, we show how comparative...
  3. Methods: Ortho-proteogenomics: Multiple proteomes investigation through orthology and a new MS-based protocol
    • Sébastien Gallien,
    • Emmanuel Perrodou,
    • Christine Carapito,
    • Caroline Deshayes,
    • Jean-Marc Reyrat,
    • Alain Van Dorsselaer,
    • Olivier Poch,
    • Christine Schaeffer,
    • and Odile Lecompte
    Genome Res. January 2009 19: 128-135; Published in Advance October 27, 2008, doi:10.1101/gr.081901.108
    .... , Gokhale, R.S. ( 2004 ) Enzymic activation and transfer of fatty acids as acyl-adenylates in mycobacteria . Nature 428 : 441 – 445 . ↵ Wang, R. , Prince, J.T. , Marcotte, E.M. ( 2005 ) Mass spectrometry of the M. smegmatis proteome: Protein expression levels correlate with function, operons, and codon bias...
  4. LETTER: Reductive evolution and niche adaptation inferred from the genome of Mycobacterium ulcerans, the causative agent of Buruli ulcer
    • Timothy P. Stinear,
    • Torsten Seemann,
    • Sacha Pidot,
    • Wafa Frigui,
    • Gilles Reysset,
    • Thierry Garnier,
    • Guillaume Meurice,
    • David Simon,
    • Christiane Bouchier,
    • Laurence Ma,
    • Magali Tichit,
    • Jessica L. Porter,
    • Janine Ryan,
    • Paul D.R. Johnson,
    • John K. Davies,
    • Grant A. Jenkin,
    • Pamela L.C. Small,
    • Louis M. Jones,
    • Fredj Tekaia,
    • Françoise Laval,
    • Mamadou Daffé,
    • Julian Parkhill,
    • and Stewart T. Cole
    Genome Res. February 2007 17: 192-200; Published in Advance January 8, 2007, doi:10.1101/gr.5942807
    ...Tool ( Carver et al. 2005 ) was used for comparative analysis. Lipid analysis Lipids were extracted with CHCl 3 /CH 3 OH (1:1 v/v) and subjected to MALDI-TOF mass spectrometry using a Voyager DE-STR MALDI-TOF instrument (PerSeptive Biosystems) equipped with a pulse nitrogen laser emitting at 337 nm...
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