Searching journal content for articles similar to Wang et al. 12 (5): 824.

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  1. METHODS: The Phusion Assembler
    • James C. Mullikin and
    • Zemin Ning
    Genome Res. January 1, 2003 13: 81-90; Published in Advance December 30, 2002, doi:10.1101/gr.731003
    ...( Wang et al. 2002 ) was applied to the 4.2× coverage WGS sequence data of the 466 Mbp rice ( Yu et al. 2002 ). RePS starts by masking all 20-mers in the input data that occur more than a multiple of the depth of shotgun sequence coverage, these are called mathematically defined repeats (MDRs), grouping...
  2. Perspective: Assembly of large genomes using second-generation sequencing
    • Michael C. Schatz,
    • Arthur L. Delcher,
    • and Steven L. Salzberg
    Genome Res. September 2010 20: 1165-1173; Published in Advance May 27, 2010, doi:10.1101/gr.101360.109
    ...as paired-end sequencingusing traditionalmethods. After the successful assembly of the human (International Human Genome Sequencing Consortium 2001; Venter et al. 2001) and mouse (Waterston et al. 2002) s by whole- shotgun sequencing, most large-scale projects quickly moved to adopt the WGS approach, which...
  3. Resource: De novo assembly of human genomes with massively parallel short read sequencing
    • Ruiqiang Li,
    • Hongmei Zhu,
    • Jue Ruan,
    • Wubin Qian,
    • Xiaodong Fang,
    • Zhongbin Shi,
    • Yingrui Li,
    • Shengting Li,
    • Gao Shan,
    • Karsten Kristiansen,
    • Songgang Li,
    • Huanming Yang,
    • Jian Wang,
    • and Jun Wang
    Genome Res. February 2010 20: 265-272; Published in Advance December 17, 2009, doi:10.1101/gr.097261.109
    ...assembler that masks exact repeats identified from the shotgun data. Genome Res 12: 824–831. Wang J,WangW, Li R, Li Y, TianG,Goodman L, FanW, Zhang J, Li J, Zhang J, et al. 2008. The diploid sequence of an Asian individual. Nature 456: 60–65. Warren RL, SuttonGG, Jones SJ, Holt RA. 2007. Assemblingmillions...
  4. Methods: De Novo Repeat Classification and Fragment Assembly
    • Paul A. Pevzner,
    • Haixu Tang,
    • and Glenn Tesler
    Genome Res. September 2004 14: 1786-1796; doi:10.1101/gr.2395204
    ...). Also, blocks of adjacent 1s are represented as position and length. Another approach (that is equivalent to the “repeat masking” procedure used in many WGS assemblers) is to simply glue together all predefined high-multiplicity repeats at the preprocessing stage. ↵ 12 If one removes low...
  5. Methods: PCAP: A Whole-Genome Assembly Program
    • Xiaoqiu Huang,
    • Jianmin Wang,
    • Srinivas Aluru,
    • Shiaw-Pyng Yang,
    • and LaDeana Hillier
    Genome Res. September 2003 13: 2164-2170; doi:10.1101/gr.1390403
    ...., Han, Y., Huang, X., Zhang, J., Ye, C., Zhang, Y., Hu, J., Zhang, K., et al. 2002 . RePS: A sequence assembler that masks exact repeats identified from the shotgun data. Genome Res. 12 : 824 –831. WEB SITE REFERENCES ftp://ftp.ncbi.nih.gov/s/H_sapiens/CHR_20 ; human Chromosome 20 sequences. http...
  6. Methods: Estimating the Repeat Structure and Length of DNA Sequences Using ℓ-Tuples
    • Xiaoman Li and
    • Michael S. Waterman
    Genome Res. August 2003 13: 1916-1922; doi:10.1101/gr.1251803
    .... Tests based on EDF statistics. In Goodness-of-fit techniques . (eds. R.B. D'Agostino and M.A. Stevens) Marcel Dekker, New York. ↵ Wang, J., Wong, G.K., Ni, P., Han, Y., Huang, X., Zhang, J., Ye, C., Zhang, Y., Hu, J., Zhang, K., et al. 2002 . RePs: A sequence assembler that masks exact repeats...
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